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List of works by Giovanni Bussotti

A comparative encyclopedia of DNA elements in the mouse genome

scientific article

A novel, noncanonical mechanism of cytoplasmic polyadenylation operates in Drosophila embryogenesis

scientific article published on January 2010

BlastR--fast and accurate database searches for non-coding RNAs

scientific article

CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis.

scientific article published on 27 September 2015

Colonization and genetic diversification processes of Leishmania infantum in the Americas

scientific article published on 29 January 2021

Detecting and comparing non-coding RNAs in the high-throughput era

scientific article published on 24 July 2013

Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.

scientific article

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

scientific article

GIP: an open-source computational pipeline for mapping genomic instability from protists to cancer cells

scientific article published on 01 April 2022

Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, and Telomeric Amplification

article

Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani.

scientific article published on 6 November 2017

Improved definition of the mouse transcriptome via targeted RNA sequencing

scientific article published on May 2016

Intron retention-dependent gene regulation in Cryptococcus neoformans

scientific article published on 31 August 2016

Long noncoding RNAs with enhancer-like function in human cells

scientific article (publication date: October 2010)

Modulation of Aneuploidy in Leishmania donovani during Adaptation to Different In Vitro and In Vivo Environments and Its Impact on Gene Expression.

scientific article

Multiple sequence alignment modeling: methods and applications

scientific article

Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis

Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing

scientific article published on 9 March 2015

SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments

scientific article

T-Coffee: Tree-based consistency objective function for alignment evaluation

scientific article published in January 2014

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

scientific article

The transcriptional response of pathogenic Leptospira to peroxide reveals new defenses against infection-related oxidative stress

scientific article published on 06 October 2020

Transposon-driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution

scientific article

Use of ChIP-Seq data for the design of a multiple promoter-alignment method

scientific article

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package

scientific article published on 28 February 2013

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures

scientific article published on November 2011

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