List of works - Martin Hartmann

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

scientific article published on 19 March 2015

A decade of irrigation transforms the soil microbiome of a semi-arid pine forest

scientific article

A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting

scientific article

A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation

scientific article published in 2011

A novel strategy to extract specific phylogenetic sequence information from community T-RFLP.

scientific article published on 6 March 2006

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

scholarly article by Henrik Nilsson et al published November 2010 in Fungal Ecology

Are traded forest tree seeds a potential source of nonnative pests?

scientific article published on 30 July 2019

Assessing effects of the entomopathogenic fungus Metarhizium brunneum on soil microbial communities in Agriotes spp. biological pest control

scientific article published on 11 September 2017

Assimilation of microbial and plant carbon by active prokaryotic and fungal populations in glacial forefields

Bacterial community structure and activity in different Cd-treated forest soils

scientific article published in November 2006

Bacterial, archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands

scientific article published on 31 July 2009

Biochar affects community composition of nitrous oxide reducers in a field experiment

article published in 2018

Climate, host and geography shape insect and fungal communities of trees

scientific article published on 18 July 2023

Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices

scientific article published on 13 October 2006

Community structures and substrate utilization of bacteria in soils from organic and conventional farming systems of the DOK long-term field experiment

scientific article published in 2006

Contrasting sensitivity of soil bacterial and fungal community composition to one year of water limitation in Scots pine mesocosms

scientific article published in 2023

Distinct soil microbial diversity under long-term organic and conventional farming

scientific article

Drought resistance and resilience of rhizosphere communities in forest soils from the cellular to ecosystem scale – insights from <scp><sup>13</sup>C</scp> pulse labeling

scientific article published in 2024

Drought-induced tree mortality in Scots pine mesocosms promotes changes in soil microbial communities and trophic groups

scientific article published in 2024

Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthma

scientific article

Ecology of Alpine Macrofungi - Combining Historical with Recent Data.

scientific article published on 26 October 2017

Effects of conventional, organic and conservation agriculture on soil physical properties, root growth and microbial habitats in a long-term field experiment

scientific article published in July 2024

Effects of management practices on the ecosystem-service multifunctionality of temperate grasslands

scientific article published on 7 May 2024

Effects of titanium dioxide nanoparticles on soil microbial communities and wheat biomass

scholarly article by Janine Moll et al published August 2017 in Soil Biology and Biochemistry

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences

scientific article

Fungal community structure in soils of conventional and organic farming systems

scientific article published in 2010

Improved recovery of ancient DNA from subfossil wood - application to the world's oldest Late Glacial pine forest

scientific article published on 15 December 2017

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

article

Improving ITS sequence data for identification of plant pathogenic fungi

article

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

scientific article

Isolation of a substantial proportion of forest soil bacterial communities detected via pyrotag sequencing

scientific article

Limited resilience of the soil microbiome to mechanical compaction within four growing seasons of agricultural management

scientific article published in 2021

Location: root architecture structures rhizosphere microbial associations

scientific article published in 2023

Long-term stability of soil bacterial and fungal community structures revealed in their abundant and rare fractions

scientific article published on 24 July 2021

Long-term warming alters the composition of Arctic soil microbial communities

scientific article

METAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data.

scientific article published on 2 March 2015

Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets

scientific article

Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker

scholarly article by Johan Bengtsson-Palme published in June 2018

Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets

scientific article published on 15 June 2011

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

scientific article published on 24 February 2016

Microbial diversity in European alpine permafrost and active layers

scientific article published on 31 January 2016

Microbial succession on decomposing root litter in a drought-prone Scots pine forest

scientific article published on 23 May 2019

Networking in the Plant Microbiome

scientific article published on 12 February 2016

Neutrophil elastase alters the murine gut microbiota resulting in enhanced Salmonella colonization

scientific article

Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical forest

scientific article

Positive diversity-functioning relationships in model communities of methanotrophic bacteria.

scientific article published on 11 January 2018

Potential relevance between soybean nitrogen uptake and rhizosphere prokaryotic communities under waterlogging stress

scientific article published in 2023

Potential sources of microbial colonizers in an initial soil ecosystem after retreat of an alpine glacier

scientific article published on 15 January 2016

Prolonged water limitation shifts the soil microbiome from copiotrophic to oligotrophic lifestyles in <scp>Scots</scp> pine mesocosms

scientific article published in 2023

Ranking the magnitude of crop and farming system effects on soil microbial biomass and genetic structure of bacterial communities

scientific article published in September 2006

Reliability for detecting composition and changes of microbial communities by T-RFLP genetic profiling

scientific article

Residual polymerase activity-induced bias in terminal restriction fragment length polymorphism analysis

scientific article published in February 2007

Resistance and resilience of the forest soil microbiome to logging-associated compaction

scientific article

Response of soil microbial communities to the application of a formulated Metarhizium brunneum biocontrol strain

article published in 2019

Semi-automated genetic analyses of soil microbial communities: comparison of T-RFLP and RISA based on descriptive and discriminative statistical approaches

scientific article

Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests

scientific article

Site and land-use associations of soil bacteria and fungi define core and indicative taxa

scientific article published on 7 January 2022

Stable isotope probing implicates a species of Cortinarius in carbon transfer through ectomycorrhizal fungal mycelial networks in Arctic tundra

scientific article published on 17 December 2015

Taxon-specific fungal preference for distinct soil particle size fractions

Temporal Dynamics of Soil Microbial Communities below the Seedbed under Two Contrasting Tillage Regimes

scientific article

Temporal stability of the mouse gut microbiota in relation to innate and adaptive immunity

scientific article

Tolerance of the forest soil microbiome to increasing mercury concentrations

scientific article published in February 2017

Towards a unified paradigm for sequence-based identification of fungi

scientific article

V-REVCOMP: automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets

scientific article published on 27 April 2011

V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

scientific article published on 27 August 2010

Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield

scientific article published on 21 January 2015

Water limitation intensity shifts carbon allocation dynamics in Scots pine mesocosms

scientific article published in 2023

List of works by Martin Hartmann

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

A decade of irrigation transforms the soil microbiome of a semi-arid pine forest

A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting

A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation

A novel strategy to extract specific phylogenetic sequence information from community T-RFLP.

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

Are traded forest tree seeds a potential source of nonnative pests?

Assessing effects of the entomopathogenic fungus Metarhizium brunneum on soil microbial communities in Agriotes spp. biological pest control

Assimilation of microbial and plant carbon by active prokaryotic and fungal populations in glacial forefields

Bacterial community structure and activity in different Cd-treated forest soils

Bacterial, archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands

Biochar affects community composition of nitrous oxide reducers in a field experiment

Climate, host and geography shape insect and fungal communities of trees

Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices

Community structures and substrate utilization of bacteria in soils from organic and conventional farming systems of the DOK long-term field experiment

Contrasting sensitivity of soil bacterial and fungal community composition to one year of water limitation in Scots pine mesocosms

Distinct soil microbial diversity under long-term organic and conventional farming

Drought resistance and resilience of rhizosphere communities in forest soils from the cellular to ecosystem scale – insights from <scp><sup>13</sup>C</scp> pulse labeling

Drought-induced tree mortality in Scots pine mesocosms promotes changes in soil microbial communities and trophic groups

Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthma

Ecology of Alpine Macrofungi - Combining Historical with Recent Data.

Effects of conventional, organic and conservation agriculture on soil physical properties, root growth and microbial habitats in a long-term field experiment

Effects of management practices on the ecosystem-service multifunctionality of temperate grasslands

Effects of titanium dioxide nanoparticles on soil microbial communities and wheat biomass

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences

Fungal community structure in soils of conventional and organic farming systems

Improved recovery of ancient DNA from subfossil wood - application to the world's oldest Late Glacial pine forest

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

Improving ITS sequence data for identification of plant pathogenic fungi

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

Isolation of a substantial proportion of forest soil bacterial communities detected via pyrotag sequencing

Limited resilience of the soil microbiome to mechanical compaction within four growing seasons of agricultural management

Location: root architecture structures rhizosphere microbial associations

Long-term stability of soil bacterial and fungal community structures revealed in their abundant and rare fractions

Long-term warming alters the composition of Arctic soil microbial communities

METAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data.

Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets

Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker

Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

Microbial diversity in European alpine permafrost and active layers

Microbial succession on decomposing root litter in a drought-prone Scots pine forest

Networking in the Plant Microbiome

Neutrophil elastase alters the murine gut microbiota resulting in enhanced Salmonella colonization

Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical forest

Positive diversity-functioning relationships in model communities of methanotrophic bacteria.

Potential relevance between soybean nitrogen uptake and rhizosphere prokaryotic communities under waterlogging stress

Potential sources of microbial colonizers in an initial soil ecosystem after retreat of an alpine glacier

Prolonged water limitation shifts the soil microbiome from copiotrophic to oligotrophic lifestyles in <scp>Scots</scp> pine mesocosms

Ranking the magnitude of crop and farming system effects on soil microbial biomass and genetic structure of bacterial communities

Reliability for detecting composition and changes of microbial communities by T-RFLP genetic profiling

Residual polymerase activity-induced bias in terminal restriction fragment length polymorphism analysis

Resistance and resilience of the forest soil microbiome to logging-associated compaction

Response of soil microbial communities to the application of a formulated Metarhizium brunneum biocontrol strain

Semi-automated genetic analyses of soil microbial communities: comparison of T-RFLP and RISA based on descriptive and discriminative statistical approaches

Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests

Site and land-use associations of soil bacteria and fungi define core and indicative taxa

Stable isotope probing implicates a species of Cortinarius in carbon transfer through ectomycorrhizal fungal mycelial networks in Arctic tundra

Taxon-specific fungal preference for distinct soil particle size fractions

Temporal Dynamics of Soil Microbial Communities below the Seedbed under Two Contrasting Tillage Regimes

Temporal stability of the mouse gut microbiota in relation to innate and adaptive immunity

Tolerance of the forest soil microbiome to increasing mercury concentrations

Towards a unified paradigm for sequence-based identification of fungi

V-REVCOMP: automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets

V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield

Water limitation intensity shifts carbon allocation dynamics in Scots pine mesocosms