List of works - Sithichoke Tangphatsornruang

A de novo reference assembly of the yellow mangrove Ceriops zippeliana genome

scientific article published in 2022

A SNP variation in an expansin (EgExp4) gene affects height in oil palm

scientific article published on 16 March 2022

A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred population.

scientific article

A single base substitution in BADH/AMADH is responsible for fragrance in cucumber (Cucumis sativus L.), and development of SNAP markers for the fragrance.

scientific article

ACC oxidase and miRNA 159a, and their involvement in fresh fruit bunch yield (FFB) via sex ratio determination in oil palm.

scientific article published on 20 February 2016

Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript.

scientific article

Assessment of the Genetic Diversity and Population Structure of Rhizophora mucronata along Coastal Areas in Thailand

scientific article published in 2023

Brown rice and retrograded brown rice alleviate inflammatory response in dextran sulfate sodium (DSS)-induced colitis mice

scientific article published on 17 November 2017

Characterization of cellulolytic microbial consortium enriched on Napier grass using metagenomic approaches.

scientific article published on 20 November 2017

Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek)

scientific article

Characterization of rubber tree microRNA in phytohormone response using large genomic DNA libraries, promoter sequence and gene expression analysis.

scientific article

Characterization of the chloroplast genome sequence of oil palm (Elaeis guineensis Jacq.).

scientific article published on 2 April 2012

Characterization of the complete chloroplast genome of Hevea brasiliensis reveals genome rearrangement, RNA editing sites and phylogenetic relationships

scientific article published on 15 January 2011

Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships

publication published on 28 October 2020

Comparative Analysis and Phylogenetic Relationships of Ceriops Species (Rhizophoraceae) and Avicennia lanata (Acanthaceae): Insight into the Chloroplast Genome Evolution between Middle and Seaward Zones of Mangrove Forests

scientific article published on 01 March 2022

Comparative Study of Bacterial Communities in Nepenthes Pitchers and Their Correlation to Species and Fluid Acidity.

scientific article published on 10 June 2016

Comparative analysis of microbial profiles in cow rumen fed with different dietary fiber by tagged 16S rRNA gene pyrosequencing.

scientific article published on 8 March 2013

Comparative analysis of sugarcane bagasse metagenome reveals unique and conserved biomass-degrading enzymes among lignocellulolytic microbial communities

scientific article

Comparative metagenomic analysis of microcosm structures and lignocellulolytic enzyme systems of symbiotic biomass-degrading consortia.

scientific article

Comparative mitochondrial genome analysis of Pythium insidiosum and related oomycete species provides new insights into genetic variation and phylogenetic relationships

scientific article published on 20 August 2015

Complete Genome Sequences of Four Serotypes of Dengue Virus Prototype Continuously Maintained in the Laboratory

scientific article published on 09 May 2019

Construction of a high-density integrated genetic linkage map of rubber tree (Hevea brasiliensis) using genotyping-by-sequencing (GBS).

scientific article published on 27 May 2015

De novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species

scientific article

Determination of the half-life of chloroplast transcripts in tobacco leaves.

scientific article published in January 2014

Development of polymorphic markers from expressed sequence tags of Manihot esculenta Crantz.

scientific article published in May 2008

Development of simple sequence repeat markers from expressed sequence tags of the black tiger shrimp (Penaeus monodon).

scientific article published in November 2008

Draft Genome Sequence of the Pathogenic Oomycete Pythium insidiosum Strain Pi-S, Isolated from a Patient with Pythiosis

scientific article published on 18 June 2015

Draft genome sequence of Arthrospira platensis C1 (PCC9438).

scientific article

Dynamics of biogenic amines and bacterial communities in a Thai fermented pork product Nham

scientific article published on 24 January 2019

Dynamics of coral-associated microbiomes during a thermal bleaching event

scientific article published on 23 March 2018

Effect of freeze-thaw process on physical properties, microbial activities and population structures of anaerobic sludge.

scientific article published on 19 December 2016

Effects of methylation-sensitive enzymes on the enrichment of genic SNPs and the degree of genome complexity reduction in a two-enzyme genotyping-by-sequencing (GBS) approach: a case study in oil palm (Elaeis guineensis).

scientific article

Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling

scientific article published on 02 December 2014

Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome.

scientific article

Gene discovery and functional marker development for fragrance in sorghum (Sorghum bicolor (L.) Moench).

scientific article published on 22 August 2013

Genome-wide SNP discovery and identification of QTL associated with agronomic traits in oil palm using genotyping-by-sequencing (GBS).

scientific article published on 20 February 2015

Genome-wide association mapping of latex yield and girth in Amazonian accessions of Hevea brasiliensis grown in a suboptimal climate zone.

scientific article

Genome-wide association mapping of virulence gene in rice blast fungus Magnaporthe oryzae using a genotyping by sequencing approach

scientific article published on 15 May 2018

Heat-induced shift in coral microbiome reveals several members of the Rhodobacteraceae family as indicator species for thermal stress in Porites lutea

scientific article published on 23 September 2019

High resolution profiling of coral-associated bacterial communities using full-length 16S rRNA sequence data from PacBio SMRT sequencing system.

scientific article

Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi.

scientific article published on 28 October 2015

Insights into the phylogeny and metabolic potential of a primary tropical peat swamp forest microbial community by metagenomic analysis.

scientific article

Large-scale SNP discovery through RNA sequencing and SNP genotyping by targeted enrichment sequencing in cassava (Manihot esculenta Crantz).

scientific article

Metagenomic profiles of free-living archaea, bacteria and small eukaryotes in coastal areas of Sichang island, Thailand

scientific article

Microbial communities in the reef water at Kham Island, lower Gulf of Thailand.

scientific article

Microbial ecology of Thailand tsunami and non-tsunami affected terrestrials

scientific article (publication date: 2014)

Probing the Phylogenomics and Putative Pathogenicity Genes of Pythium insidiosum by Oomycete Genome Analyses.

scientific article

Quantitative trait loci and candidate genes associated with starch pasting viscosity characteristics in cassava (Manihot esculenta Crantz)

scientific article published on 24 April 2013

Rice height QTLs in KDML105 chromosome segment substitution lines

scientific article published on 06 September 2019

SNP identification from RNA sequencing and linkage map construction of rubber tree for anchoring the draft genome

scientific article published on April 2015

SSR and EST-SSR-based genetic linkage map of cassava (Manihot esculenta Crantz).

scientific article

Sequencing and analysis of three plasmids from Lactobacillus casei TISTR1341 and development of plasmid-derived Escherichia coli-L. casei shuttle vectors.

scientific article published on 7 August 2011

Shotgun metagenomic sequencing from Manao-Pee cave, Thailand, reveals insight into the microbial community structure and its metabolic potential

scientific article published on 27 June 2019

Single nucleotide polymorphism marker development in the rubber tree, Hevea brasiliensis (Euphorbiaceae)

scientific article published on 24 October 2011

Structural and functional diversity of free-living microorganisms in reef surface, Kra island, Thailand

scientific article

Survey of Microbial Diversity in Flood Areas during Thailand 2011 Flood Crisis Using High-Throughput Tagged Amplicon Pyrosequencing.

scientific article published on 28 May 2015

Targeted disruption of the polyketide synthase gene pks15 affects virulence against insects and phagocytic survival in the fungus Beauveria bassiana

scientific article published on 06 May 2017

The AKR gene family and modifying sex ratios in palms through abiotic stress responsiveness

scientific article published on 12 December 2014

The First Genetic Linkage Map of Winged Bean [Psophocarpus tetragonolobus (L.) DC.] and QTL Mapping for Flower-, Pod-, and Seed-Related Traits

scientific article published in 2022

The effect of different 3' untranslated regions on the accumulation and stability of transcripts of a gfp transgene in chloroplasts of transplastomic tobacco.

scientific article published on 22 September 2010

The two chromosomes of the mitochondrial genome of a sugarcane cultivar: assembly and recombination analysis using long PacBio reads

scientific article published on 17 August 2016

Transcriptome analysis of normal and mantled developing oil palm flower and fruit.

scientific article published on 5 March 2013

Transcriptome analysis of oil palm inflorescences revealed candidate genes for an auxin signaling pathway involved in parthenocarpy

article

Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum

scientific article published on 6 February 2014

Transcriptome sequencing of Hevea brasiliensis for development of microsatellite markers and construction of a genetic linkage map

scientific article published on 14 November 2011

Transcriptome-based discovery of pathways and genes related to reproduction of the black tiger shrimp (Penaeus monodon).

scientific article

Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing

scientific article published on 30 October 2018

List of works by Sithichoke Tangphatsornruang

A <i>de novo</i> reference assembly of the yellow mangrove <i>Ceriops zippeliana</i> genome

A SNP variation in an expansin (<i>EgExp4</i>) gene affects height in oil palm

A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred population.

A single base substitution in BADH/AMADH is responsible for fragrance in cucumber (Cucumis sativus L.), and development of SNAP markers for the fragrance.

ACC oxidase and miRNA 159a, and their involvement in fresh fruit bunch yield (FFB) via sex ratio determination in oil palm.

Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript.

Assessment of the Genetic Diversity and Population Structure of Rhizophora mucronata along Coastal Areas in Thailand

Brown rice and retrograded brown rice alleviate inflammatory response in dextran sulfate sodium (DSS)-induced colitis mice

Characterization of cellulolytic microbial consortium enriched on Napier grass using metagenomic approaches.

Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek)

Characterization of rubber tree microRNA in phytohormone response using large genomic DNA libraries, promoter sequence and gene expression analysis.

Characterization of the chloroplast genome sequence of oil palm (Elaeis guineensis Jacq.).

Characterization of the complete chloroplast genome of Hevea brasiliensis reveals genome rearrangement, RNA editing sites and phylogenetic relationships

Chloroplast genome data of <i>Luffa acutangula</i> and <i>Luffa aegyptiaca</i> and their phylogenetic relationships

Comparative Analysis and Phylogenetic Relationships of Ceriops Species (Rhizophoraceae) and Avicennia lanata (Acanthaceae): Insight into the Chloroplast Genome Evolution between Middle and Seaward Zones of Mangrove Forests

Comparative Study of Bacterial Communities in Nepenthes Pitchers and Their Correlation to Species and Fluid Acidity.

Comparative analysis of microbial profiles in cow rumen fed with different dietary fiber by tagged 16S rRNA gene pyrosequencing.

Comparative analysis of sugarcane bagasse metagenome reveals unique and conserved biomass-degrading enzymes among lignocellulolytic microbial communities

Comparative metagenomic analysis of microcosm structures and lignocellulolytic enzyme systems of symbiotic biomass-degrading consortia.

Comparative mitochondrial genome analysis of Pythium insidiosum and related oomycete species provides new insights into genetic variation and phylogenetic relationships

Complete Genome Sequences of Four Serotypes of Dengue Virus Prototype Continuously Maintained in the Laboratory

Construction of a high-density integrated genetic linkage map of rubber tree (Hevea brasiliensis) using genotyping-by-sequencing (GBS).

De novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species

Determination of the half-life of chloroplast transcripts in tobacco leaves.

Development of polymorphic markers from expressed sequence tags of Manihot esculenta Crantz.

Development of simple sequence repeat markers from expressed sequence tags of the black tiger shrimp (Penaeus monodon).

Draft Genome Sequence of the Pathogenic Oomycete Pythium insidiosum Strain Pi-S, Isolated from a Patient with Pythiosis

Draft genome sequence of Arthrospira platensis C1 (PCC9438).

Dynamics of biogenic amines and bacterial communities in a Thai fermented pork product Nham

Dynamics of coral-associated microbiomes during a thermal bleaching event

Effect of freeze-thaw process on physical properties, microbial activities and population structures of anaerobic sludge.

Effects of methylation-sensitive enzymes on the enrichment of genic SNPs and the degree of genome complexity reduction in a two-enzyme genotyping-by-sequencing (GBS) approach: a case study in oil palm (Elaeis guineensis).

Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling

Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome.

Gene discovery and functional marker development for fragrance in sorghum (Sorghum bicolor (L.) Moench).

Genome-wide SNP discovery and identification of QTL associated with agronomic traits in oil palm using genotyping-by-sequencing (GBS).

Genome-wide association mapping of latex yield and girth in Amazonian accessions of Hevea brasiliensis grown in a suboptimal climate zone.

Genome-wide association mapping of virulence gene in rice blast fungus Magnaporthe oryzae using a genotyping by sequencing approach

Heat-induced shift in coral microbiome reveals several members of the Rhodobacteraceae family as indicator species for thermal stress in Porites lutea

High resolution profiling of coral-associated bacterial communities using full-length 16S rRNA sequence data from PacBio SMRT sequencing system.

Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi.

Insights into the phylogeny and metabolic potential of a primary tropical peat swamp forest microbial community by metagenomic analysis.

Large-scale SNP discovery through RNA sequencing and SNP genotyping by targeted enrichment sequencing in cassava (Manihot esculenta Crantz).

Metagenomic profiles of free-living archaea, bacteria and small eukaryotes in coastal areas of Sichang island, Thailand

Microbial communities in the reef water at Kham Island, lower Gulf of Thailand.

Microbial ecology of Thailand tsunami and non-tsunami affected terrestrials

Probing the Phylogenomics and Putative Pathogenicity Genes of Pythium insidiosum by Oomycete Genome Analyses.

Quantitative trait loci and candidate genes associated with starch pasting viscosity characteristics in cassava (Manihot esculenta Crantz)

Rice height QTLs in KDML105 chromosome segment substitution lines

SNP identification from RNA sequencing and linkage map construction of rubber tree for anchoring the draft genome

SSR and EST-SSR-based genetic linkage map of cassava (Manihot esculenta Crantz).

Sequencing and analysis of three plasmids from Lactobacillus casei TISTR1341 and development of plasmid-derived Escherichia coli-L. casei shuttle vectors.

Shotgun metagenomic sequencing from Manao-Pee cave, Thailand, reveals insight into the microbial community structure and its metabolic potential

Single nucleotide polymorphism marker development in the rubber tree, Hevea brasiliensis (Euphorbiaceae)

Structural and functional diversity of free-living microorganisms in reef surface, Kra island, Thailand

Survey of Microbial Diversity in Flood Areas during Thailand 2011 Flood Crisis Using High-Throughput Tagged Amplicon Pyrosequencing.

Targeted disruption of the polyketide synthase gene pks15 affects virulence against insects and phagocytic survival in the fungus Beauveria bassiana

The AKR gene family and modifying sex ratios in palms through abiotic stress responsiveness

The First Genetic Linkage Map of Winged Bean [Psophocarpus tetragonolobus (L.) DC.] and QTL Mapping for Flower-, Pod-, and Seed-Related Traits

The effect of different 3' untranslated regions on the accumulation and stability of transcripts of a gfp transgene in chloroplasts of transplastomic tobacco.

The two chromosomes of the mitochondrial genome of a sugarcane cultivar: assembly and recombination analysis using long PacBio reads

Transcriptome analysis of normal and mantled developing oil palm flower and fruit.

Transcriptome analysis of oil palm inflorescences revealed candidate genes for an auxin signaling pathway involved in parthenocarpy

Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum

Transcriptome sequencing of Hevea brasiliensis for development of microsatellite markers and construction of a genetic linkage map

Transcriptome-based discovery of pathways and genes related to reproduction of the black tiger shrimp (Penaeus monodon).

Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing