List of works by Jean Armengaud

"You produce while I clean up", a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions

scientific article published on 27 February 2015

4-Demethylwyosine synthase from Pyrococcus abyssi is a radical-S-adenosyl-L-methionine enzyme with an additional [4Fe-4S](+2) cluster that interacts with the pyruvate co-substrate

scientific article

A comparative proteomic approach to better define Deinococcus nucleoid specificities.

scientific article

A novel -2Fe-2S- ferredoxin from Pseudomonas putida mt2 promotes the reductive reactivation of catechol 2,3-dioxygenase

scientific article published on 01 April 1998

A perfect genome annotation is within reach with the proteomics and genomics alliance.

scientific article published on 04 May 2009

A second [2Fe-2S] ferredoxin from Sphingomonas sp. Strain RW1 can function as an electron donor for the dioxin dioxygenase.

scientific article

Addition of a class IIS enzyme site in the mutagenic primer to improve two-step PCR-based targeted mutagenesis.

scientific article

Advanced Proteomics as a Powerful Tool for Studying Toxins of Human Bacterial Pathogens

scientific article published on 04 October 2019

Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti

scientific article published in March 2009

Analytical constraints for the analysis of human cell line secretomes by shotgun proteomics.

scientific article

Assessing the exoproteome of marine bacteria, lesson from a RTX-toxin abundantly secreted by Phaeobacter strain DSM 17395

scientific article (publication date: 2014)

Assessing the ratio of Bacillus spores and vegetative cells by shotgun proteomics

article

Assessing the relevance of a multiplexed methodology for proteomic biomarker measurement in the invertebrate species Gammarus fossarum: A physiological and ecotoxicological study

scientific article

Assessment of solvent residues accessibility using three Sulfo-NHS-biotin reagents in parallel: application to footprint changes of a methyltransferase upon binding its substrate.

scientific article

Author Correction: Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 12 November 2020

BMP-1 disrupts cell adhesion and enhances TGF-β activation through cleavage of the matricellular protein thrombospondin-1

scientific article published on 07 July 2020

Bacillus cereus Decreases NHE and CLO Exotoxin Synthesis to Maintain Appropriate Proteome Dynamics During Growth at Low Temperature

scientific article published on 06 October 2020

Bioactive Potential of Extracts of Labrenzia aggregata Strain USBA 371, a Halophilic Bacterium Isolated from a Terrestrial Source

scientific article published on 29 May 2020

C-terminal proteolysis of the collagen VI α3 chain by BMP-1 and proprotein convertase(s) releases endotrophin in fragments of different sizes

scientific article published on 25 July 2019

Characterization of a 2[4Fe-4S] ferredoxin obtained by chemical insertion of the Fe-S clusters into the apoferredoxin II from Rhodobacter capsulatus.

scientific article

Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: evidence for their involvement in catechol dioxygenase reactivation.

scientific article

Chlorocatechols substituted at positions 4 and 5 are substrates of the broad-spectrum chlorocatechol 1,2-dioxygenase of Pseudomonas chlororaphis RW71

scientific article

Clinical implications of recent advances in proteogenomics.

scientific article

Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum.

scientific article published on 27 May 2019

Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host

scientific article published on 05 June 2020

Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation

scientific article published on 21 April 2019

Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria

scientific article

Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium

scientific article published on 10 July 2019

Comparative proteomics reveals key proteins recruited at the nucleoid of Deinococcus after irradiation-induced DNA damage.

scientific article published on 04 December 2013

Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria

scientific article published on 11 April 2017

Contributors

Coupling caging and proteomics on the European flounder (Platichthys flesus) to assess the estuarine water quality at micro scale

scientific article published on 05 August 2019

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

scientific article published on 15 December 2021

Data for comparative proteomics of ovaries from five non-model, crustacean amphipods.

scientific article

De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups

scientific article published on 27 September 2019

Deciphering Black Extrinsic Tooth Stain Composition in Children Using Metaproteomics

scientific article published on 25 February 2022

Deciphering structure and topology of conserved COG2042 orphan proteins

scientific article

Deciphering the interactions between the Bacillus cereus linear plasmid, pBClin15, and its host by high-throughput comparative proteomics

scientific article published on 16 June 2016

Defining Diagnostic Biomarkers Using Shotgun Proteomics and MALDI-TOF Mass Spectrometry.

scientific article published on January 2017

Determination of estrogen presence in water by SPR using estrogen receptor dimerization.

scientific article published on 21 November 2007

Dichloromethane Degradation Pathway from Unsequenced <i>Hyphomicrobium</i> sp. MC8b Rapidly Explored by Pan-Proteomics

scientific article published on 27 November 2020

Direct Meta-Analyses Reveal Unexpected Microbial Life in the Highly Radioactive Water of an Operating Nuclear Reactor Core

scientific article published on 25 November 2020

Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil

scientific article published on 6 April 2017

Draft genome sequence of Citreicella aestuarii strain 357, a member of the Roseobacter clade isolated without xenobiotic pressure from a petroleum-polluted beach.

scientific article published on October 2012

Emerin self-assembly mechanism: role of the LEM domain.

scientific article

Estimating relative biomasses of organisms in microbiota using "phylopeptidomics"

scientific article published on 06 March 2020

Eukaryotic GPN-loop GTPases paralogs use a dimeric assembly reminiscent of archeal GPN.

scientific article

Evaluation of Sample Preparation Methods for Fast Proteotyping of Microorganisms by Tandem Mass Spectrometry

scientific article published on 06 September 2019

Exoproteomics of Pathogens: Analysis of Toxins and Other Virulence Factors by Proteomics.

scientific article published in January 2017

Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions.

scientific article

Experimental separation steps influence the protein content of corona around mesoporous silica nanoparticles.

scientific article published on 21 April 2017

Expression, purification, crystallization and preliminary crystallographic analysis of the PAB0955 gene product

scientific article

First Isolation and Characterization of Bacteria from the Core’s Cooling Pool of an Operating Nuclear Reactor

scientific article published in 2023

Functional distinctness in the exoproteomes of marine Synechococcus

scientific article

Gammarids as Reference Species for Freshwater Monitoring

scientific article published in 2015

Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.

scientific article published on 2 April 2016

High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.

scientific article

High-throughput proteome dynamics for discovery of key proteins in sentinel species: Unsuspected vitellogenins diversity in the crustacean Gammarus fossarum

scientific article published on 9 July 2016

High-throughput, quantitative assessment of the effects of low-dose silica nanoparticles on lung cells: grasping complex toxicity with a great depth of field

scientific article published on 18 April 2015

Host Plant Compatibility Shapes the Proteogenome of Frankia coriariae.

scientific article published on 2 May 2017

Identification, purification, and characterization of an eukaryotic-like phosphopantetheine adenylyltransferase (coenzyme A biosynthetic pathway) in the hyperthermophilic archaeon Pyrococcus abyssi.

scientific article

Identity elements required for enzymatic formation of N2,N2-dimethylguanosine from N2-monomethylated derivative and its possible role in avoiding alternative conformations in archaeal tRNA.

scientific article published on 13 January 2006

Implementation of meiosis prophase I programme requires a conserved retinoid-independent stabilizer of meiotic transcripts

scientific journal article

Improving the quality of genome, protein sequence, and taxonomy databases: a prerequisite for microbiome meta-omics 2.0.

scientific article published on 2 June 2015

In Vino Veritas: An Invitation for Ambitious, Collaborative Proteogenomics Campaigns on Plant and Animal Models

scientific article

In vitro assessment of cobalt oxide particle toxicity: identifying and circumventing interference.

scientific article published on 26 April 2013

In vivo acetylation of HMG1 protein enhances its binding affinity to distorted DNA structures.

scientific article published on December 2001

In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study.

scientific article

Low doses of gamma-irradiation induce an early bystander effect in zebrafish cells which is sufficient to radioprotect cells

scientific article

Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation

scientific article

Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides.

scientific article published on 6 December 2013

Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation

scientific article

Mass spectrometry for the detection of bioterrorism agents: from environmental to clinical applications

scientific article published on March 2016

Methionine Residues in Exoproteins and Their Recycling by Methionine Sulfoxide Reductase AB Serve as an Antioxidant Strategy in Bacillus cereus

scientific article published on 26 July 2017

Microbiology and proteomics, getting the best of both worlds!

scientific article

Microbiomes - embracing complexity

scientific article published in October 2015

Molecular Characterization of Fdx1, a Putidaredoxin‐Type [2Fe‐2S] Ferredoxin Able to Transfer Electrons to the Dioxin Dioxygenase of Sphingomonas sp. RW1 ⬇️

scientific article published on August 1, 1997

Multiple phosphorylable sites in the Zaire Ebolavirus nucleoprotein evidenced by high resolution tandem mass spectrometry

scientific article

Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry.

scientific article published on 17 April 2017

N- and O-acetylation of threonine residues in the context of proteomics

N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography

scientific article

N-terminomics and proteogenomics, getting off to a good start

scientific article published on 23 September 2014

Next-generation proteomics faces new challenges in environmental biotechnology.

scientific article published on 4 March 2016

Next-generation proteomics: toward customized biomarkers for environmental biomonitoring

scientific article

Non-model organisms, a species endangered by proteogenomics.

scientific article published on 16 January 2014

Nutrient recycling facilitates long-term stability of marine microbial phototroph-heterotroph interactions

scientific article published on 26 June 2017

Nutriproteomics and Proteogenomics: Cultivating Two Novel Hybrid Fields of Personalized Medicine with Added Societal Value

scientific article published on December 2010

OhrRA functions as a redox-responsive system controlling toxinogenesis in Bacillus cereus.

scientific article published on 30 October 2013

Omics of the early molecular dialogue between Frankia alni and Alnus glutinosa and the cellulase synton

scientific article published on 27 March 2019

Ovary and embryo proteogenomic dataset revealing diversity of vitellogenins in the crustacean Gammarus fossarum

scientific article published on 28 July 2016

Overexpression in Escherichia coli of the fdxA gene encoding Rhodobacter capsulatus ferredoxin II

scientific article published on 01 April 1995

Oxidative DNA Damage and Repair in the Radioresistant Archaeon Thermococcus gammatolerans.

scientific article

Periplasmic Bacterial Biomineralization of Copper Sulfide Nanoparticles

scientific article published in 2022

Post-translational methylations of the archaeal Mre11:Rad50 complex throughout the DNA damage response.

scientific article published on 2 January 2016

Power of positive thinking in quantitative proteomics

scientific article published on 01 September 2015

PprA Protein Is Involved in Chromosome Segregation via Its Physical and Functional Interaction with DNA Gyrase in Irradiated Deinococcus radiodurans Bacteria

scientific article published on 13 January 2016

Prioritizing targets for structural biology through the lens of proteomics: the archaeal protein TGAM_1934 from Thermococcus gammatolerans

scientific article

Proteases as Secreted Exoproteins in Mycoplasmas from Ruminant Lungs and Their Impact on Surface-Exposed Proteins

scientific article published on 14 November 2019

Protein Corona Composition of Silica Nanoparticles in Complex Media: Nanoparticle Size does not Matter

scientific article published on 29 January 2020

Proteogenomic Insights into the Intestinal Parasite Blastocystis sp. Subtype 4 Isolate WR1.

scientific article published on 4 September 2017

Proteogenomic biomarkers for identification of Francisella species and subspecies by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry

scientific article

Proteogenomic definition of biomarkers for the large Roseobacter clade and application for a quick screening of new environmental isolates.

scientific article published on 17 September 2013

Proteogenomic insights into salt tolerance by a halotolerant alpha-proteobacterium isolated from an Andean saline spring.

scientific article published on 29 May 2013

Proteogenomic insights into the core-proteome of female reproductive tissues from crustacean amphipods.

scientific article

Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants.

scientific article

Proteogenomics for environmental microbiology.

scientific article published on 18 June 2013

Proteogenomics of Gammarus fossarum to document the reproductive system of amphipods

scientific article

Proteome data to explore the impact of pBClin15 on Bacillus cereus ATCC 14579.

scientific article

Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579.

scientific article

Proteomic insights into the lifestyle of an environmentally relevant marine bacterium

scientific article

Proteomic investigation of male Gammarus fossarum, a freshwater crustacean, in response to endocrine disruptors

scientific article

Proteomics data for characterizing , an uranium-tolerant actinobacterium isolated near the Chernobyl nuclear power plant

article

Proteomics identifies Bacillus cereus EntD as a pivotal protein for the production of numerous virulence factors

scientific article

Proteomics meets blue biotechnology: a wealth of novelties and opportunities

scientific article published on 26 April 2014

Proteomics of the Roseobacter clade, a window to the marine microbiology landscape.

scientific article published on 29 September 2015

Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons

scientific article published on 29 October 2009

Quick microbial molecular phenotyping by differential shotgun proteomics

scientific article published on 04 March 2020

RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti

scientific article

RNA-binding proteins are a major target of silica nanoparticles in cell extracts

scientific article published on 5 October 2016

Reannotation of Genomes by Means of Proteomics Data.

scientific article

Recombinant expression of the fdxD gene of Rhodobacter capsulatus and characterization of its product, a [2Fe-2S] ferredoxin.

scientific article published on June 1994

ResDE-dependent regulation of enterotoxin gene expression in Bacillus cereus: evidence for multiple modes of binding for ResD and interaction with Fnr.

scientific article published on 24 April 2009

Revisiting iodination sites in thyroglobulin with an organ-oriented shotgun strategy.

scientific article

Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratory

scientific article

Rio Tinto as a niche for acidophilus enzymes of industrial relevance

scientific article published in 2023

Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 08 June 2020

Salt Stress Induced Changes in the Exoproteome of the Halotolerant Bacterium Tistlia consotensis Deciphered by Proteogenomics.

scientific article published on 19 August 2015

Shortlisting SARS-CoV-2 Peptides for Targeted Studies from Experimental Data-Dependent Acquisition Tandem Mass Spectrometry Data

scientific article published on 27 May 2020

Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus

scientific article

Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild

scientific article published on 12 October 2019

Shotgun proteomics suggests involvement of additional enzymes in dioxin degradation by Sphingomonas wittichii RW1.

scientific article published on 30 September 2013

Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes

scientific article published on 30 June 2015

Striking against bioterrorism with advanced proteomics and reference methods.

scientific article published on 8 December 2016

Structural insights into a new homodimeric self-activated GTPase family

scientific article

Structure of a [2Fe-2S] ferredoxin from Rhodobacter capsulatus likely involved in Fe-S cluster biogenesis and conformational changes observed upon reduction.

scientific article published on 10 January 2006

Subcellular localization and interaction network of the mRNA decay activator Pat1 upon UV stress

scientific article published on 13 August 2013

THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain

scientific article published on 10 May 2006

Taking the Shortcut for High-Throughput Shotgun Proteomic Analysis of Bacteria

scientific article published on 01 January 2014

The Brucella suis IbpA heat-shock chaperone is not required for virulence or for expression of the VirB type IV secretion system VirB8 protein.

scientific article published on 8 March 2014

The Deinococcus radiodurans DR1245 Protein, a DdrB Partner Homologous to YbjN Proteins and Reminiscent of Type III Secretion System Chaperones

scientific article

The Importance Of Naturally Attenuated Sars-Cov-2 In The Fight Against Covid-19

scientific article published on 28 April 2020

The abundant and essential HU proteins in Deinococcus deserti and Deinococcus radiodurans are translated from leaderless mRNA.

scientific article published on 18 September 2015

The immune system of the freshwater zebra mussel, Dreissena polymorpha, decrypted by proteogenomics of hemocytes and plasma compartments

scientific article published on 20 April 2019

The plasma membrane-associated cation-binding protein PCaP1 of Arabidopsis thaliana is a uranyl-binding protein

scientific article published in 2023

The proteomics contribution to the counter-bioterrorism toolbox in the post-COVID-19 era

scientific article published on 09 September 2020

The species origin of the serum in the culture medium influences the in vitro toxicity of silica nanoparticles to HepG2 cells.

scientific article published on 10 August 2017

The timeline of corona formation around silica nanocarriers highlights the role of the protein interactome

scientific article published on 18 November 2016

Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation.

scientific article published on 22 April 2015

Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline

scientific article published on 22 February 2016

Titanium Dioxide Nanoparticles Alter the Cellular Phosphoproteome in A549 Cells

scientific article published on 21 January 2020

Understanding butanol tolerance and assimilation in Pseudomonas putida BIRD-1: an integrated omics approach

scientific article

Vaccines inducing immunity to Lassa virus glycoprotein and nucleoprotein protect macaques after a single shot

scientific article published on 01 October 2019

methionine sulfoxide reductase P reduces ‑ and ‑diastereomers of methionine sulfoxide from a broad‑spectrum of protein substrates

scientific article published on 06 December 2018

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