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List of works by Chengqi Yi

A Novel Epigenetic Mark Derived from Vitamin C

scientific article published on 20 September 2019

A Radiolabeling-Free, qPCR-Based Method for Locus-Specific Pseudouridine Detection.

scientific article

A non-heme iron-mediated chemical demethylation in DNA and RNA

scientific article

Acetylation Enhances mRNA Stability and Translation

scientific article published on 15 March 2019

Base-Resolution Analysis of Cisplatin-DNA Adducts at the Genome Scale

scientific article published on 13 October 2016

Base-Resolution Mapping Reveals Distinct m1A Methylome in Nuclear- and Mitochondrial-Encoded Transcripts

scientific article published on 25 October 2017

Biochemical and Structural Insights into the Mechanism of DNA Recognition by Arabidopsis ETHYLENE INSENSITIVE3

scientific article

Bisulfite-Free, Nanoscale Analysis of 5-Hydroxymethylcytosine at Single Base Resolution

scientific article published on 04 October 2018

Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale

scientific article

Cellular dynamics of RNA modification

scientific article

Chemical Modifications to RNA: A New Layer of Gene Expression Regulation

scientific article published on 04 January 2017

Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome.

scientific article

Compilation of Modern Technologies To Map Genome-Wide Cytosine Modifications in DNA

scientific article published on 22 May 2019

Coupling Transcription and Translation via the Epitranscriptomic m6A Mark

scientific article published on 28 September 2018

Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA

scientific article

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes

scientific article published on 05 July 2021

Deciphering TAL effectors for 5-methylcytosine and 5-hydroxymethylcytosine recognition

scientific article published on 12 October 2017

Differential roles of human PUS10 in miRNA processing and tRNA pseudouridylation

scientific article published on 09 December 2019

Duplex interrogation by a direct DNA repair protein in search of base damage

scientific article

Dynamics of spontaneous flipping of a mismatched base in DNA duplex.

scientific article

Efficient and quantitative high-throughput tRNA sequencing.

scientific article published on 27 July 2015

Epitranscriptome sequencing technologies: decoding RNA modifications.

scientific article published on December 2016

Epitranscriptomics: Toward A Better Understanding of RNA Modifications.

scientific article published on 19 May 2017

Genome-wide mapping of cellular protein-RNA interactions enabled by chemical crosslinking

scientific article published on 18 April 2014

Integrated characterization of SARS-CoV-2 genome, microbiome, antibiotic resistance and host response from single throat swabs

scientific article published on 30 March 2021

Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase

scientific article

Jasmonate-activated MYC2 represses ETHYLENE INSENSITIVE3 activity to antagonize ethylene-promoted apical hook formation in Arabidopsis.

scientific article published on 25 March 2014

Mapping the epigenetic modifications of DNA and RNA

scientific article published on 22 May 2020

Mixed methods

scientific article published on 15 July 2020

N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO

scientific article

N<sup>1</sup>-methyladenosine methylation in tRNA drives liver tumourigenesis by regulating cholesterol metabolism

scientific article published on 02 November 2021

Oxidative demethylation of DNA and RNA mediated by non-heme iron-dependent dioxygenases.

scientific article

Protein cysteine phosphorylation of SarA/MgrA family transcriptional regulators mediates bacterial virulence and antibiotic resistance

scientific article published on August 27, 2012

Pseudouridine Chemical Labeling and Profiling

scientific article

Pseudouridine: the fifth RNA nucleotide with renewed interests.

scientific article published on 24 June 2016

Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons.

scientific article published on 26 January 2012

Single-Cell 5-Formylcytosine Landscapes of Mammalian Early Embryos and ESCs at Single-Base Resolution.

scientific article published on 15 March 2017

Single-base resolution analysis of DNA epigenome via high-throughput sequencing.

scientific article published on 29 January 2016

Structural insight into the oxidation-sensing mechanism of the antibiotic resistance of regulator MexR

scientific article

Structural insight into the oxidation-sensing mechanism of the antibiotic resistance of regulator MexR.

scientific article

Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked protein-DNA system

scientific article

Switching demethylation activities between AlkB family RNA/DNA demethylases through exchange of active-site residues

scientific article

Targeting MgrA-mediated virulence regulation in Staphylococcus aureus

scientific article

Targeting PUS7 suppresses tRNA pseudouridylation and glioblastoma tumorigenesis

scientific article published on 16 August 2021

Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair

scientific article published on 27 June 2016

Tissue-specific 5-hydroxymethylcytosine landscape of the human genome

scientific article published on 12 July 2021

Transcriptome-Wide Mapping of N 1-Methyladenosine Methylome.

scientific article published in January 2017

Transcriptome-wide dynamics of RNA pseudouridylation

scientific article published on 19 August 2015

Transcriptome-wide mapping reveals reversible and dynamic N(1)-methyladenosine methylome

scientific journal article

Transposase assisted tagmentation of RNA/DNA hybrid duplexes

scientific article published on 23 July 2020

Unnatural cytosine bases recognized as thymines by DNA polymerases via the formation of the Watson-Crick geometry

scientific article published on 05 December 2018