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List of works by Jemma L Geoghegan

A Novel Rubi-Like Virus in the Pacific Electric Ray (Tetronarce californica) Reveals the Complex Evolutionary History of the Matonaviridae

scientific article published in 2021

A comparison of methods for estimating substitution rates from ancient DNA sequence data.

scientific article

A generic assay for whole-genome amplification and deep sequencing of enterovirus A71.

scientific article published on 19 February 2015

A synthesis of bacterial and archaeal phenotypic trait data

scientific article published on 05 June 2020

Aerobic bacteria and archaea tend to have larger and more versatile genomes

scientific article published on 21 January 2021

Cloacal virome of an ancient host lineage – The tuatara (Sphenodon punctatus) – Reveals abundant and diverse diet-related viruses

scientific article published in October 2022

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families

scientific article (publication date: 8 February 2017)

Contact heterogeneity, rather than transmission efficiency, limits the emergence and spread of canine influenza virus

scientific article (publication date: October 2014)

Continental synchronicity of human influenza virus epidemics despite climactic variation.

scientific article published on 11 January 2018

Correction: Continental synchronicity of human influenza virus epidemics despite climactic variation

scientific article published on 7 February 2018

Cross-validation to select Bayesian hierarchical models in phylogenetics

scientific article published on 26 May 2016

Divergent Influenza-Like Viruses of Amphibians and Fish Support an Ancient Evolutionary Association

scientific article published on 18 September 2020

Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods

scientific article

Evolution of Human Respiratory Syncytial Virus (RSV) over Multiple Seasons in New South Wales, Australia

Evolution of Human Respiratory Syncytial Virus (RSV) over Multiple Seasons in New South Wales, Australia

article

Evolutionary Virology at 40

article

Exploring epiallele stability in a population-epigenetic model

scientific article published on 5 October 2012

Fluid Spatial Dynamics of West Nile Virus in the United States: Rapid Spread in a Permissive Host Environment

scientific article

Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing

scientific article published on 5 January 2021

Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand

scientific article published on 11 December 2020

Hidden diversity and evolution of viruses in market fish

scientific article published on 01 July 2018

High diversity and rapid spatial turnover of integron gene cassettes in soil

article

How accurately can we assess zoonotic risk?

scientific article

Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods

scholarly article published 18 September 2017

Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods.

scientific article published on 19 June 2018

Meta-Transcriptomic Identification of Divergent Amnoonviridae in Fish

scientific article published on 04 November 2020

Metagenomic sequencing reveals a lack of virus exchange between native and invasive freshwater fish across the Murray-Darling Basin, Australia ⬇️

scientific article

Modelling Selection under Soft Inheritance

2013 doctoral thesis by Jemma Geoghegan at University of Otago

Molecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV).

scientific article

Pathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergence

scientific article published in August 2016

Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.

scientific article published on 17 June 2015

Population-epigenetic models of selection.

scientific article published on 9 August 2011

Predicting virus emergence amid evolutionary noise

scientific article published on October 2017

Red fox viromes in urban and rural landscapes

scientific article published on 01 July 2020

Seasonal drivers of the epidemiology of arthropod-borne viruses in Australia

scientific article

Slippery when wet: cross-species transmission of divergent coronaviruses in bony and jawless fish and the evolutionary history of the <i>Coronaviridae</i>

scientific article published on 31 May 2021

The Origins of SARS-CoV-2: A Critical Review

scholarly article

The Peril and Promise of Integrons: Beyond Antibiotic Resistance

scientific article published on 13 January 2020

The adaptive invasion of epialleles in a heterogeneous environment

scientific article published on 18 May 2013

The evolutionary potential of paramutation: a population-epigenetic model.

scientific article published on 7 June 2013

The phylogenomics of evolving virus virulence

scholarly article by Jemma L Geoghegan published in October 2018

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2

scientific article

Virological Sampling of Inaccessible Wildlife with Drones

article published in 2018

Virological Sampling of Inaccessible Wildlife with Drones

Virological Sampling of Inaccessible Wildlife with Drones

Virological factors that increase the transmissibility of emerging human viruses

scientific article

Virome analysis of New Zealand’s bats reveals cross-species viral transmission among the <i>Coronaviridae</i>

scientific article published in January 2024

Virome composition in marine fish revealed by meta-transcriptomics

scientific article published on 01 January 2021

Viromes of Antarctic fish resemble the diversity found at lower latitudes

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