List of works - Patrick Kemmeren

A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system

scientific article

A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system.

scientific article published on 13 October 2009

A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions.

scientific article published on 23 December 2015

A systematic analysis of genetic interactions and their underlying biology in childhood cancer

scientific article published on 06 October 2021

Adaptable gene-specific dye bias correction for two-channel DNA microarrays

scientific article published on 28 April 2009

An Evaluation of Active Learning Causal Discovery Methods for Reverse-Engineering Local Causal Pathways of Gene Regulation

scientific article published on 4 March 2016

An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas

scientific article published on 09 January 2005

An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity

scientific article published on 11 March 2020

ArrayExpress--a public repository for microarray gene expression data at the EBI

scientific article (publication date: 2003)

CCR4/NOT complex associates with the proteasome and regulates histone methylation

scholarly article

Cell cycle population effects in perturbation studies

scientific article published on 21 June 2014

DNA Methylation Profiling Identifies Distinct Clusters in Angiosarcomas

scientific article published on 27 September 2019

De-novo learning of genome-scale regulatory networks in S. cerevisiae.

scientific article

Expression Profiler: next generation--an online platform for analysis of microarray data

scientific article (publication date: July 2004)

From microarray data to results. Workshop on genomic approaches to microarray data analysis.

scientific article

Functional overlap and regulatory links shape genetic interactions between signaling pathways.

scientific article published in December 2010

Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function

scientific article published on 01 October 2020

Growth condition dependency is the major cause of non-responsiveness upon genetic perturbation

scientific article

Integrating functional genomics data.

scientific article

Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors.

scientific article

Monitoring global messenger RNA changes in externally controlled microarray experiments.

scientific article

Multiple robust signatures for detecting lymph node metastasis in head and neck cancer

scientific article published on 01 February 2006

Nitric oxide donor induces temporal and dose-dependent reduction of gene expression in human endothelial cells.

scientific article published on 8 July 2004

Nitric oxide-dependent and nitric oxide-independent transcriptional responses to high shear stress in endothelial cells.

scientific article published on 7 February 2005

Protein interaction verification and functional annotation by integrated analysis of genome-scale data.

scientific article

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern.

scientific article published on 13 May 2019

The genomic landscape of compensatory evolution

scientific article

The role of Ctk1 kinase in termination of small non-coding RNAs

scientific article (publication date: 2013)

Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

scientific article (publication date: March 2007)

Transcriptome-based identification of pro- and antioxidative gene expression in kidney cortex of nitric oxide-depleted rats

scientific article published on 17 October 2006

Yeast glucose pathways converge on the transcriptional regulation of trehalose biosynthesis.

scientific article

List of works by Patrick Kemmeren

A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system

A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system.

A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions.

A systematic analysis of genetic interactions and their underlying biology in childhood cancer

Adaptable gene-specific dye bias correction for two-channel DNA microarrays

An Evaluation of Active Learning Causal Discovery Methods for Reverse-Engineering Local Causal Pathways of Gene Regulation

An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas

An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity

ArrayExpress--a public repository for microarray gene expression data at the EBI

CCR4/NOT complex associates with the proteasome and regulates histone methylation

Cell cycle population effects in perturbation studies

DNA Methylation Profiling Identifies Distinct Clusters in Angiosarcomas

De-novo learning of genome-scale regulatory networks in S. cerevisiae.

Expression Profiler: next generation--an online platform for analysis of microarray data

From microarray data to results. Workshop on genomic approaches to microarray data analysis.

Functional overlap and regulatory links shape genetic interactions between signaling pathways.

Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function

Growth condition dependency is the major cause of non-responsiveness upon genetic perturbation

Integrating functional genomics data.

Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors.

Monitoring global messenger RNA changes in externally controlled microarray experiments.

Multiple robust signatures for detecting lymph node metastasis in head and neck cancer

Nitric oxide donor induces temporal and dose-dependent reduction of gene expression in human endothelial cells.

Nitric oxide-dependent and nitric oxide-independent transcriptional responses to high shear stress in endothelial cells.

Protein interaction verification and functional annotation by integrated analysis of genome-scale data.

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern.

The genomic landscape of compensatory evolution

The role of Ctk1 kinase in termination of small non-coding RNAs

Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

Transcriptome-based identification of pro- and antioxidative gene expression in kidney cortex of nitric oxide-depleted rats

Yeast glucose pathways converge on the transcriptional regulation of trehalose biosynthesis.