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List of works by Mario Dos Reis

A beginners guide to estimating the non-synonymous to synonymous rate ratio of all protein-coding genes in a genome.

scientific article

A biologist's guide to Bayesian phylogenetic analysis.

scientific article

A penalized-likelihood method to estimate the distribution of selection coefficients from phylogenetic data

scientific article (publication date: May 2014)

An Evaluation of Different Partitioning Strategies for Bayesian Estimation of Species Divergence Times

scientific article published on 4 July 2017

An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations

article

Analysis of the Albumin/alpha-Fetoprotein/Afamin/Group specific component gene family in the context of zebrafish liver differentiation

scientific article published on 13 May 2010

Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times ⬇️

scientific article published on February 10, 2011

Bayesian Estimation of Species Divergence Times Using Correlated Quantitative Characters

scientific article published on 01 November 2019

Bayesian Molecular Clock Dating Using Genome-Scale Datasets

scientific article published on 01 January 2019

Bayesian estimation of nonsynonymous/synonymous rate ratios for pairwise sequence comparisons

scientific article published on 18 April 2014

Bayesian molecular clock dating of species divergences in the genomics era.

scientific article published on 21 December 2015

Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci

scientific article

Charting the host adaptation of influenza viruses

scientific article

Churchill, a zinc finger transcriptional activator, regulates the transition between gastrulation and neurulation

scientific journal article

Comparison of different strategies for using fossil calibrations to generate the time prior in Bayesian molecular clock dating

scientific article published on 11 July 2017

Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution

scientific article

Dating Tips for Divergence-Time Estimation

scientific article published on 12 September 2015

Dire wolves were the last of an ancient New World canid lineage

scientific article

Estimating the Distribution of Selection Coefficients from Phylogenetic Data Using Sitewise Mutation-Selection Models ⬇️

scientific article published on December 29, 2011

Estimating translational selection in eukaryotic genomes

scientific article

Finding Direction in the Search for Selection

scientific article published on 2 December 2016

Fossil-free dating

scientific article published on 01 May 2018

Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar's forests past

scientific article (publication date: 19 July 2016)

How to calculate the non-synonymous to synonymous rate ratio of protein-coding genes under the Fisher-Wright mutation-selection framework.

scientific article

Identifying changes in selective constraints: host shifts in influenza.

scientific article

Molecular evolutionary characterization of a V1R subfamily unique to strepsirrhine primates

scientific article published on January 2014

Neither phylogenomic nor palaeontological data support a Palaeogene origin of placental mammals

scientific article (publication date: 2014)

Notes on the birth-death prior with fossil calibrations for Bayesian estimation of species divergence times.

scientific article published on July 2016

Phylogenomic Resolution of the Cetacean Tree of Life Using Target Sequence Capture

scientific article published on 21 October 2019

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

scientific article (publication date: 7 September 2012)

Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths

scientific article published on 21 October 2019

Rapid morphological evolution in placental mammals post-dates the origin of the crown group

scientific article published on 01 March 2019

RelTime Rates Collapse to a Strict Clock When Estimating the Timeline of Animal Diversification

scientific article published on 25 April 2017

Statistical properties of the branch-site test of positive selection

scientific article published on 18 November 2010

The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference ⬇️

scientific article

The impact of the rate prior on Bayesian estimation of divergence times with multiple Loci

scientific article (publication date: July 2014)

Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales

scientific article

Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome

scientific article

Why do more divergent sequences produce smaller nonsynonymous/synonymous rate ratios in pairwise sequence comparisons?

scientific article published on 21 June 2013

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