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List of works by Kimberly A Bishop-Lilly

A Case of Early Re-infection with SARS-CoV-2

scientific article published on 19 September 2020

A Department of Defense Laboratory Consortium Approach to Next Generation Sequencing and Bioinformatics Training for Infectious Disease Surveillance in Kenya

scientific article published on 25 September 2020

A Yersinia pestis-specific, lytic phage preparation significantly reduces viable Y. pestis on various hard surfaces experimentally contaminated with the bacterium

scientific article

An Observational Study of Sepsis in Takeo Province Cambodia: An in-depth examination of pathogens causing severe infections

scientific article published on 17 August 2020

Arbovirus detection in insect vectors by rapid, high-throughput pyrosequencing

scientific article

BLASTPLOT: a PERL module to plot next generation sequencing NCBI-BLAST results

scientific article published on 31 March 2014

Bacterial Etiology and Risk Factors Associated with Cellulitis and Purulent Skin Abscesses in Military Trainees

scientific article

Bioinformatic Characterization of Mosquito Viromes within the Eastern United States and Puerto Rico: Discovery of Novel Viruses

scientific article

Characterization of pPCP1 Plasmids in Yersinia pestis Strains Isolated from the Former Soviet Union

scientific article

Characterizing Phage Genomes for Therapeutic Applications

scientific article published on 10 April 2018

Comparative analysis of bat genomes provides insight into the evolution of flight and immunity

scientific article

Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood.

scientific article

Complete genome sequences for 35 biothreat assay-relevant bacillus species

scientific article

Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor

scientific article published on 30 April 2015

Conjugative Transfer of a Novel Staphylococcal Plasmid Encoding the Biocide Resistance Gene,

article

Correction for Johnson et al., "Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species".

scientific article published on 18 January 2018

Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor

scientific article published on 21 April 2016

Corrigendum: Conjugative Transfer of a Novel Staphylococcal Plasmid Encoding the Biocide Resistance Gene, qacA

scientific article published on 14 May 2020

Crystal structure of the Hendra virus attachment G glycoprotein bound to a potent cross-reactive neutralizing human monoclonal antibody

scientific article

Detection of Recombinant Rousettus Bat Coronavirus GCCDC1 in Lesser Dawn Bats (Eonycteris spelaea) in Singapore

scientific article published on 14 May 2020

Development of a high throughput assay for indirectly measuring phage growth using the OmniLog(TM) system

scientific article published on July 2012

Differential MicroRNA Analyses of Burkholderia pseudomallei- and Francisella tularensis-Exposed hPBMCs Reveal Potential Biomarkers

scientific article published on 16 July 2017

Direct-from-blood RNA sequencing identifies the cause of post-bronchoscopy fever

scientific article published on 28 October 2019

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

scientific article

Enrichment post-library preparation enhances the sensitivity of high-throughput sequencing-based detection and characterization of viruses from complex samples

Erratum for Schooley et al., "Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection"

scholarly article by Robert T. Schooley et al published December 2018 in Antimicrobial Agents and Chemotherapy

Finishing genomes with limited resources: lessons from an ensemble of microbial genomes

scientific article

Full-genome sequence of human betacoronavirus 2c jordan-n3/2012 after serial passage in Mammalian cells

scientific article

Fully Human Immunoglobulin G From Transchromosomic Bovines Treats Nonhuman Primates Infected With Ebola Virus Makona Isolate

scientific article published on 22 November 2018

Genetic evidence for the involvement of the S-layer protein gene sap and the sporulation genes spo0A, spo0B, and spo0F in Phage AP50c infection of Bacillus anthracis

scientific article

Genome Sequencing of Four Strains of Rickettsia prowazekii, the Causative Agent of Epidemic Typhus, Including One Flying Squirrel Isolate

scientific article

Genome sequencing of 15 clinical Vibrio isolates, including 13 non-o1/non-o139 serogroup strains

scientific article

Genome sequencing of 18 francisella strains to aid in assay development and testing

scientific article published on 30 April 2015

Genomic Characterization of USA300 Methicillin-Resistant Staphylococcus aureus (MRSA) to Evaluate Intraclass Transmission and Recurrence of Skin and Soft Tissue Infection (SSTI) Among High-Risk Military Trainees

scientific article published on 17 April 2017

Genomic characterization of the Bacillus cereus sensu lato species: backdrop to the evolution of Bacillus anthracis

scientific article published on 29 May 2012

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2

scientific article

Genomic epidemiology of MRSA infection and colonization isolates among military trainees with skin and soft tissue infection

scientific article published on 22 February 2019

Genomic signatures of strain selection and enhancement in Bacillus atrophaeus var. globigii, a historical biowarfare simulant

scientific article published in 2011

High-Quality Draft Genome Sequence of Pseudomonas aeruginosa 268 Isolated from a Patient with a Left Ventricular Assist Device

Manual Annotation Studio (MAS): a collaborative platform for manual functional annotation of viral and microbial genomes

scientific article published on 09 October 2021

Novel high-molecular-weight, R-type bacteriocins of Clostridium difficile

scientific article published on 14 September 2012

PheMaDB: a solution for storage, retrieval, and analysis of high throughput phenotype data

scientific article

Rapid identification of genetic modifications in Bacillus anthracis using whole genome draft sequences generated by 454 pyrosequencing

scientific article

Reclassification of Wolbachia persica as Francisella persica comb. nov. and emended description of the family Francisellaceae.

scientific article published on 7 January 2016

Scanning the landscape of genome architecture of non-O1 and non-O139 Vibrio cholerae by whole genome mapping reveals extensive population genetic diversity

scientific article

Selective deforestation and exposure of African wildlife to bat-borne viruses

scientific article published on 22 April 2024

The temporal RNA virome patterns of a lesser dawn bat (Eonycteris spelaea) colony revealed by deep sequencing

scientific article published in 2020

Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica

scientific article published on 30 April 2015

Virome profiling of fig wasps (Ceratosolen spp.) reveals virus diversity spanning four realms

scientific article published in 2024

Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity

scientific article published on 28 May 2013

Whole genome sequencing of phage resistant Bacillus anthracis mutants reveals an essential role for cell surface anchoring protein CsaB in phage AP50c adsorption

scientific article published on 26 October 2012

miRNA Temporal Analyzer (mirnaTA): a bioinformatics tool for identifying differentially expressed microRNAs in temporal studies using normal quantile transformation

scientific article published on 13 October 2014

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