List of works - Fiona J Whelan

A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis

scientific article published on 14 August 2017

A guide to bioinformatics for immunologists

scientific article

Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling

scientific article

Clinical Insights into Pulmonary Exacerbations in Cystic Fibrosis from the Microbiome. What Are We Missing?

scientific article published in November 2015

Coinfinder: detecting significant associations and dissociations in pangenomes

scientific article published on 24 February 2020

Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age.

scientific article published on May 2015

Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota

scientific article published on 20 January 2020

Early life nasal microbiota in infants with cystic fibrosis

scientific article published on 21 June 2016

Evidence for Selection in the Abundant Accessory Gene Content of a Prokaryote Pangenome

scientific article published on 01 August 2021

Gene-gene relationships in an Escherichia coli accessory genome are linked to function and mobility

scientific article published in 2021

Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis

scientific article

Partitioning and correlating subgroup characteristics from Aligned Pattern Clusters.

scientific article published on 22 April 2016

Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother's periconceptional diet

scientific article published on 31 August 2015

Prevalence and Outcomes of Achromobacter Species Infections in Adults with Cystic Fibrosis: a North American Cohort Study

scientific article published on 26 April 2017

Reemergence of Lower-Airway Microbiota in Lung Transplant Patients with Cystic Fibrosis

scientific article

Streptococcus pneumoniae Colonization Disrupts the Microbial Community within the Upper Respiratory Tract of Aging Mice

scientific article published on 19 January 2016

Streptococcus pneumoniae colonization is required to alter the nasal microbiota in cigarette smoke-exposed mice.

scientific article

The Evolution of the Scavenger Receptor Cysteine-Rich Domain of the Class A Scavenger Receptors

scientific article published on 6 July 2015

The Evolving Cystic Fibrosis Microbiome: A Comparative Cohort Study Spanning 16 Years

scientific article

The effects of inhaled aztreonam on the cystic fibrosis lung microbiome.

scientific article

The evolution of the class A scavenger receptors

scientific article

The loss of topography in the microbial communities of the upper respiratory tract in the elderly.

scientific article

List of works by Fiona J Whelan

A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis

A guide to bioinformatics for immunologists

Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling

Clinical Insights into Pulmonary Exacerbations in Cystic Fibrosis from the Microbiome. What Are We Missing?

Coinfinder: detecting significant associations and dissociations in pangenomes

Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age.

Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota

Early life nasal microbiota in infants with cystic fibrosis

Evidence for Selection in the Abundant Accessory Gene Content of a Prokaryote Pangenome

Gene-gene relationships in an Escherichia coli accessory genome are linked to function and mobility

Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis

Partitioning and correlating subgroup characteristics from Aligned Pattern Clusters.

Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother's periconceptional diet

Prevalence and Outcomes of Achromobacter Species Infections in Adults with Cystic Fibrosis: a North American Cohort Study

Reemergence of Lower-Airway Microbiota in Lung Transplant Patients with Cystic Fibrosis

Streptococcus pneumoniae Colonization Disrupts the Microbial Community within the Upper Respiratory Tract of Aging Mice

Streptococcus pneumoniae colonization is required to alter the nasal microbiota in cigarette smoke-exposed mice.

The Evolution of the Scavenger Receptor Cysteine-Rich Domain of the Class A Scavenger Receptors

The Evolving Cystic Fibrosis Microbiome: A Comparative Cohort Study Spanning 16 Years

The effects of inhaled aztreonam on the cystic fibrosis lung microbiome.

The evolution of the class A scavenger receptors

The loss of topography in the microbial communities of the upper respiratory tract in the elderly.