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List of works by Hang Phan

A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database.

scientific article

Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission. ⬇️

scientific article published on 7 August 2017

DNA extraction from primary liquid blood cultures for bloodstream infection diagnosis using whole genome sequencing.

scientific article published on 10 January 2018

Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli.

scientific article

High rates of human fecal carriage of mcr-1-positive multi-drug resistant Enterobacteriaceae isolates emerge in China in association with successful plasmid families.

scientific article published on 10 October 2017

Illumina short-read and MinION long-read WGS to characterize the molecular epidemiology of an NDM-1 Serratia marcescens outbreak in Romania

scientific article published on 8 December 2017

Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications

scientific article published on 13 July 2014

Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids

scientific article published on 9 March 2017

PINALOG: a novel approach to align protein interaction networks--implications for complex detection and function prediction.

scientific article published on 13 March 2012

Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology

scientific article published on 09 February 2017

Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches

scientific article published on 9 June 2017

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