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List of works by Malte Christoph Rühlemann

A fungal pathogen induces systemic susceptibility and systemic shifts in wheat metabolome and microbiome composition

scientific article published on 20 April 2020

A structured weight loss program increases gut microbiota phylogenetic diversity and reduces levels of Collinsella in obese type 2 diabetics: A pilot study

scientific article published on 18 July 2019

Alterations of the bile microbiome in primary sclerosing cholangitis

scientific article published on 26 June 2019

Application of the distance-based F test in an mGWAS investigating β diversity of intestinal microbiota identifies variants in SLC9A8 (NHE8) and 3 other loci

scientific article published on 17 August 2017

Beneficial Effects of a Dietary Weight Loss Intervention on Human Gut Microbiome Diversity and Metabolism Are Not Sustained during Weight Maintenance

scientific article published on 30 November 2016

Cold-induced conversion of cholesterol to bile acids in mice shapes the gut microbiome and promotes adaptive thermogenesis.

scientific article published on 12 June 2017

Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms

scientific article published on 14 September 2019

Consistent alterations in faecal microbiomes of patients with primary sclerosing cholangitis independent of associated colitis

scientific article published on 28 June 2019

Editorial: gut microbial profile associated with primary sclerosing cholangitis-what is new and how do we progress from here? Authors' reply

scientific article published on 01 September 2019

Epidermal lipid composition, barrier integrity and eczematous inflammation are associated with skin microbiome configuration

scientific article published on 5 February 2018

Exocrine Pancreatic Function Modulates Plasma Metabolites Through Changes in Gut Microbiota Composition

scientific article published on 01 April 2021

Faecal microbiota profiles as diagnostic biomarkers in primary sclerosing cholangitis

scientific article published on 23 May 2016

Functional abdominal pain and discomfort (IBS) is not associated with faecal microbiota composition in the general population

article

Functional sequencing read annotation for high precision microbiome analysis

scientific article published on 29 November 2017

Functions of the Microbiota for the Physiology of Animal Metaorganisms

scientific article published on 19 December 2018

Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.

scientific article

Genome-wide associations of human gut microbiome variation and implications for causal inference analyses

scientific article published on 22 June 2020

Gestational diabetes is associated with change in the gut microbiota composition in third trimester of pregnancy and postpartum

scientific article

Gut mycobiome of primary sclerosing cholangitis patients is characterised by an increase of Trichocladium griseum and Candida species

scientific article published on 25 October 2019

Heart failure is associated with depletion of core intestinal microbiota

scientific article

Helicobacter pylori infection associates with fecal microbiota composition and diversity

scientific article published on 27 December 2019

Impaired Exocrine Pancreatic Function Associates With Changes in Intestinal Microbiota Composition and Diversity

article

Interdisciplinary approach towards a systems medicine toolbox using the example of inflammatory diseases

scientific article

Intestinal protozoan infections shape fecal bacterial microbiota in children from Guinea-Bissau

scientific article published on 03 March 2021

Linkage analysis identifies novel genetic modifiers of microbiome traits in families with inflammatory bowel disease

scientific article published in 2022

Long-term instability of the intestinal microbiome is associated with metabolic liver disease, low microbiota diversity, diabetes mellitus and impaired exocrine pancreatic function

scientific article published on 09 November 2020

Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative

scientific article

Microbiomarkers in inflammatory bowel diseases: caveats come with caviar

scientific article published on 21 July 2017

Minor compositional alterations in faecal microbiota after five weeks and five months storage at room temperature on filter papers

scientific article published on 12 December 2019

Normal gut microbiome in NMDA receptor encephalitis

scientific article published on 17 October 2019

Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition

scientific article published on 06 August 2019

On the limits of 16S rRNA gene-based metagenome prediction and functional profiling

scientific article published in 2024

Paternal chronic colitis causes epigenetic inheritance of susceptibility to colitis.

scientific article published on 19 August 2016

Pseudomonas aeruginosa populations in the cystic fibrosis lung lose susceptibility to newly applied β-lactams within 3 days

scientific article published on 01 October 2019

Sucrase-isomaltase 15Phe IBS risk variant in relation to dietary carbohydrates and faecal microbiota composition.

scientific article published on 13 January 2018

Vy-PER: eliminating false positive detection of virus integration events in next generation sequencing data.

scientific article

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