List of works - Sergey Ovchinnikov

A structural biology community assessment of AlphaFold 2 applications

A structural biology community assessment of AlphaFold2 applications

scientific article published in 2022

Accurate prediction of protein structures and interactions using a three-track neural network

scientific article

Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.

scientific article

Automatic structure prediction of oligomeric assemblies using Robetta in CASP12.

scientific article

Catalytic efficiencies of directly evolved phosphotriesterase variants with structurally different organophosphorus compounds in vitro

scientific article published on 26 November 2015

ColabFold: making protein folding accessible to all

scientific article published on 30 May 2022

Computation and Functional Studies Provide a Model for the Structure of the Zinc Transporter hZIP4.

scientific article published on 13 May 2015

Genomic language model predicts protein co-regulation and function

scientific article published on 3 April 2024

Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta.

scientific article

Large-scale determination of previously unsolved protein structures using evolutionary information

scientific article

Protein structure prediction using Rosetta in CASP12.

scientific article

Pseudoscorpion mitochondria show rearranged genes and genome-wide reductions of RNA gene sizes and inferred structures, yet typical nucleotide composition bias ⬇️

scientific article (publication date: 12 March 2012)

Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information.

scientific article

Scaffolding protein functional sites using deep learning ⬇️

scientific article published on 22 July 2022

Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex

scientific article

Structural insights into SAM domain-mediated tankyrase oligomerization.

scientific article published on 21 June 2016

Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation

scientific article published on 19 June 2020

Structure of a bd oxidase indicates similar mechanisms for membrane-integrated oxygen reductases.

scientific article

Structure prediction using sparse simulated NOE restraints with Rosetta in CASP11.

scientific article

List of works by Sergey Ovchinnikov

A structural biology community assessment of AlphaFold 2 applications

A structural biology community assessment of AlphaFold2 applications

Accurate prediction of protein structures and interactions using a three-track neural network

Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.

Automatic structure prediction of oligomeric assemblies using Robetta in CASP12.

Catalytic efficiencies of directly evolved phosphotriesterase variants with structurally different organophosphorus compounds in vitro

ColabFold: making protein folding accessible to all

Computation and Functional Studies Provide a Model for the Structure of the Zinc Transporter hZIP4.

Genomic language model predicts protein co-regulation and function

Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta.

Large-scale determination of previously unsolved protein structures using evolutionary information

Protein structure prediction using Rosetta in CASP12.

Pseudoscorpion mitochondria show rearranged genes and genome-wide reductions of RNA gene sizes and inferred structures, yet typical nucleotide composition bias ⬇️

Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information.

Scaffolding protein functional sites using deep learning ⬇️

Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex

Structural insights into SAM domain-mediated tankyrase oligomerization.

Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation

Structure of a bd oxidase indicates similar mechanisms for membrane-integrated oxygen reductases.

Structure prediction using sparse simulated NOE restraints with Rosetta in CASP11.