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List of works by Markus List

CFP suppresses breast cancer cell growth by TES-mediated upregulation of the transcription factor DDIT3

scientific article published on 12 February 2019

Classification of breast cancer subtypes by combining gene expression and DNA methylation data.

scientific article

Comprehensive analysis of high-throughput screens with HiTSeekR

scientific article

Comprehensive evaluation of computational cell-type quantification methods for immuno-oncology

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

scientific article published on 04 November 2020

Corrigendum to "Protein-based nanotoxicology assessment strategy" [Nanomed Nanotechnol Biol Med. 2017;13(3):1229-1233].

scientific article published in June 2017

Cracking the black box of deep sequence-based protein–protein interaction prediction

scientific article published in 2024

De novo pathway-based biomarker identification.

scientific article published in September 2017

DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets

scientific article

DeepBlueR: large-scale epigenomic analysis in R.

scientific article published on 22 February 2017

Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposing

scientific article published in 2024

Efficient Management of High-Throughput Screening Libraries with SAVANAH

Efficient sample tracking with OpenLabFramework

scientific article

Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing

scientific article published on 14 July 2020

Interactive microbial distribution analysis using BioAtlas

scientific article published on 29 April 2017

JAMI - Fast computation of Conditional Mutual Information for ceRNA network analysis.

scientific article

KeyPathwayMinerWeb: online multi-omics network enrichment.

scientific article published on 5 May 2016

Microarray R-based analysis of complex lysate experiments with MIRACLE.

scientific article published on September 2014

On the limits of 16S rRNA gene-based metagenome prediction and functional profiling

scientific article published in 2024

On the performance of de novo pathway enrichment.

scientific article

OpenLabNotes--An Electronic Laboratory Notebook Extension for OpenLabFramework

scientific article published on 6 October 2015

Protein-based nanotoxicology assessment strategy

scientific article published on 4 January 2017

Quantitative comparison of within-sample heterogeneity scores for DNA methylation data

scientific article published on 27 February 2020

Robust de novo pathway enrichment with KeyPathwayMiner 5.

scientific article published on 28 June 2016

Ten Simple Rules for Developing Usable Software in Computational Biology

scientific article

The AIMe registry for artificial intelligence in biomedical research

scientific article published on 25 August 2021

The mRNA-binding Protein TTP/ZFP36 in Hepatocarcinogenesis and Hepatocellular Carcinoma

scientific article published on 08 November 2019

Using Docker Compose for the Simple Deployment of an Integrated Drug Target Screening Platform

scientific article published on 10 June 2017

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