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List of works by Philip J Farabaugh

A New Model for Phenotypic Suppression of Frameshift Mutations by Mutant tRNAs ⬇️

scientific article published on March 1, 1998

A comprehensive analysis of translational missense errors in the yeast Saccharomyces cerevisiae.

scientific article

A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae

scientific article

Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction.

scientific article published on 22 April 2009

An mRNA sequence derived from a programmed frameshifting signal decreases codon discrimination during translation initiation

scientific article

An mRNA sequence derived from the yeast EST3 gene stimulates programmed +1 translational frameshifting.

scientific article published on 28 February 2007

BUD22 affects Ty1 retrotransposition and ribosome biogenesis in Saccharomyces cerevisiae

scientific article

Codon-specific effects of tRNA anticodon loop modifications on translational misreading errors in the yeast Saccharomyces cerevisiae.

scientific article published in November 2018

Comment on Blachinsky et al. "Procedure for controlling number of repeats, orientation, and order during cloning of oligonucleotides" Biotechniques 36:933-936 (June 2004).

scientific article published in October 2004

Connection between stop codon reassignment and frequent use of shifty stop frameshifting

scientific article published on 27 March 2009

Correlation of nonsense sites in the lacI gene with specific codons in the nucleotide sequence.

scientific article published on August 1978

Distinct paths to stop codon reassignment by the variant-code organisms Tetrahymena and Euplotes

scientific article

Effect of frameshift-inducing mutants of elongation factor 1alpha on programmed +1 frameshifting in yeast ⬇️

scientific article published on January 1, 1998

Effects of tRNA modification on translational accuracy depend on intrinsic codon-anticodon strength

scientific article published on 23 December 2015

Efficient translational frameshifting occurs within a conserved sequence of the overlap between the two genes of a yeast Ty1 transposon

scientific article

Erratum for Lamichhane et al., lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast.

scientific article published in April 2015

Evolution of +1 programmed frameshifting signals and frameshift-regulating tRNAs in the order Saccharomycetales

scientific article published on 12 July 2006

GCR1-Dependent Transcriptional Activation of Yeast Retrotransposon Ty2-917 ⬇️

scientific article published on August 1, 1997

Glucose signalling pathway controls the programmed ribosomal frameshift efficiency in retroviral-like element Ty3 in Saccharomyces cerevisiae

scientific article published on 12 October 2011

How translational accuracy influences reading frame maintenance

scientific article

Identification and analysis of frameshift sites

scientific article published on 01 January 1998

Insertion of the eukaryotic transposable element Ty1 creates a 5-base pair duplication.

scientific article published in July 1980

Lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast.

scientific article published on 28 May 2013

Molecular basis of base substitution hotspots in Escherichia coli

scientific article

Mutations of ribosomal protein S5 suppress a defect in late-30S ribosomal subunit biogenesis caused by lack of the RbfA biogenesis factor

scientific article published on 18 June 2015

Near-cognate peptidyl-tRNAs promote +1 programmed translational frameshifting in yeast

scientific article published on 01 December 1999

New ways of initiating translation in eukaryotes.

scientific article published on December 2001

Nonsense-mediated decay mutants do not affect programmed -1 frameshifting

scientific article

Oncogenic role of DDX3 in breast cancer biogenesis.

scientific article published on 11 February 2008

Programmed +1 frameshifting stimulated by complementarity between a downstream mRNA sequence and an error-correcting region of rRNA.

scientific article

Programmed +1 translational frameshifting in the yeast Saccharomyces cerevisiae results from disruption of translational error correction.

scientific article

Programmed translational frameshifting

scientific article published on 01 March 1996

Programmed translational frameshifting.

scientific article

Pulling the ribosome out of frame by +1 at a programmed frameshift site by cognate binding of aminoacyl-tRNA.

scientific article published on January 1995

Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site

scientific article published on 01 July 1990

Ribosomal protein and biogenesis factors affect multiple steps during movement of the Saccharomyces cerevisiae Ty1 retrotransposon.

scientific article

Ribosome structure: revisiting the connection between translational accuracy and unconventional decoding

scientific article published on 01 April 2002

Saturation mutagenesis of a +1 programmed frameshift-inducing mRNA sequence derived from a yeast retrotransposon.

scientific article

Sequence of the lacI gene

scientific article

Shifty ciliates: frequent programmed translational frameshifting in euplotids

scientific article

Special peptidyl-tRNA molecules can promote translational frameshifting without slippage.

scientific article published on December 1994

Studies of translational misreading in vivo show that the ribosome very efficiently discriminates against most potential errors

scientific article

Suppressible four-base glycine and proline codons in yeast.

scientific article

Testing constraints on rRNA bases that make nonsequence-specific contacts with the codon-anticodon complex in the ribosomal A site.

scientific article published on 25 June 2007

The frequency of translational misreading errors in E. coli is largely determined by tRNA competition.

scientific article

The origins of gene instability in yeast.

scientific article

The problem of genetic code misreading during protein synthesis

scientific article published on 01 January 2019

The upstream activation site of a Ty2 element of yeast is necessary but not sufficient to promote maximal transcription of the element

scientific article

Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting

scientific article

Translational accuracy during exponential, postdiauxic, and stationary growth phases in Saccharomyces cerevisiae.

scientific article published on April 2004

Translational frameshifting: implications for the mechanism of translational frame maintenance

scientific article

Translational suppressors and antisuppressors alter the efficiency of the Ty1 programmed translational frameshift

scientific article

Transposable elements (Ty) in yeast

scientific article published on 01 January 1981

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