Search filters

List of works by Jacqueline A Keane

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

scientific article

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

scientific article

BamView: visualizing and interpretation of next-generation sequencing read alignments

scientific article (publication date: March 2013)

Circlator: automated circularization of genome assemblies using long sequencing reads

scientific article

Comparison Of Multi-locus Sequence Typing Software For Next Generation Sequencing Data

article published in 2017

Comparison of classical multi-locus sequence typing software for next-generation sequencing data

scientific article published on 4 July 2017

Conditional-ready mouse embryonic stem cell derived macrophages enable the study of essential genes in macrophage function

scientific article

Corrigendum: SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data

scholarly article published in Microbial genomics

Epithelial IL-22RA1-mediated fucosylation promotes intestinal colonization resistance to an opportunistic pathogen

scientific article

GFF3toEMBL: Preparing annotated assemblies for submission to EMBL

article

GeneDB--an annotation database for pathogens

scientific article

IVA: accurate de novo assembly of RNA virus genomes

scientific article

Multilocus sequence typing by blast from de novo assemblies against PubMLST

article

Optimal enzymes for amplifying sequencing libraries

scientific article published on 28 December 2011

Phylogenetic Analysis of Klebsiella pneumoniae from Hospitalized Children, Pakistan

scientific article

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

scientific article published on 11 May 2015

PlasmidTron: assembling the cause of phenotypes and genotypes from NGS data.

scientific article

PlasmidTron: assembling the cause of phenotypes from NGS data

Rapid multi-locus sequence typing direct from uncorrected long reads using

scientific article published on 31 July 2018

Rapid multi-locus sequence typing direct from uncorrected long reads using Krocus

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

scientific article

Roary: rapid large-scale prokaryote pan genome analysis

scientific article

Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data

scientific article

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments.

scientific article published on 29 April 2016

SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs

scientific article published on 3 May 2017

SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data

SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data

scientific article published on 15 June 2018

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries

scientific article published on 21 January 2016

The genomes of four tapeworm species reveal adaptations to parasitism

scientific article

The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa

scientific article published in Nature Communications

Paulina is supported by:

About Paulina

Help