List of works by Christopher Staley

A Community Multi-Omics Approach towards the Assessment of Surface Water Quality in an Urban River System.

scientific article published on 14 March 2017

A High-Throughput DNA-Sequencing Approach for Determining Sources of Fecal Bacteria in a Lake Superior Estuary.

scientific article

A multi-omics based ecological analysis of coastal marine sediments from Gladstone, in Australia's Central Queensland, and Heron Island, a nearby fringing platform reef

scientific article published on 30 July 2017

A novel microbial source tracking microarray for pathogen detection and fecal source identification in environmental systems.

scientific article published on 27 May 2015

A pilot study demonstrating the impact of surgical bowel preparation on intestinal microbiota composition following colon and rectal surgery

scientific article published on 22 June 2022

A pilot study of fecal bile acid and microbiota profiles in inflammatory bowel disease and primary sclerosing cholangitis

scientific article published on 10 January 2019

Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia.

scientific article

Amplicon-based taxonomic characterization of bacteria in urban and peri-urban roof-harvested rainwater stored in tanks

scientific article

Analysis of gut microbiota - An ever changing landscape

scientific article

Antibiotic-induced Disruption of Intestinal Microbiota Contributes to Failure of Vertical Sleeve Gastrectomy.

scientific article published on 8 March 2018

Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River.

scientific article

Application of SourceTracker for Accurate Identification of Fecal Pollution in Recreational Freshwater: A Double-Blinded Study

scientific article published on 13 March 2018

Assessment of sources of human pathogens and fecal contamination in a Florida freshwater lake.

scientific article

Associations between soil bacterial community structure and nutrient cycling functions in long-term organic farm soils following cover crop and organic fertilizer amendment

scientific article published on 8 June 2016

Bacterial community structure is indicative of chemical inputs in the Upper Mississippi River

scientific article

Beach sand and the potential for infectious disease transmission: observations and recommendations

article

Clinician Guide to Microbiome Testing

scientific article published on 28 September 2018

Community dynamics drive punctuated engraftment of the fecal microbiome following transplantation using freeze-dried, encapsulated fecal microbiota.

scientific article

Comparative decay of culturable faecal indicator bacteria, microbial source tracking marker genes, and enteric pathogens in laboratory microcosms that mimic a sub-tropical environment

scientific article published on 09 August 2020

Comparisons of bacterial and archaeal communities in the rumen and a dual-flow continuous culture fermentation system using amplicon sequencing

article

Complementary amplicon-based genomic approaches for the study of fungal communities in humans

scientific article

Complete Microbiota Engraftment Is Not Essential for Recovery from Recurrent Clostridium difficile Infection following Fecal Microbiota Transplantation

scientific article published on 20 December 2016

Compositional and temporal stability of fecal taxon libraries for use with SourceTracker in sub-tropical catchments

scientific article published on 13 August 2019

Contemporary Applications of Fecal Microbiota Transplantation to Treat Intestinal Diseases in Humans

scientific article published on 25 November 2017

Core functional traits of bacterial communities in the Upper Mississippi River show limited variation in response to land cover

scientific article

Correlations between pathogen concentration and fecal indicator marker genes in beach environments.

scientific article

Cultivar and phosphorus effects on switchgrass yield and rhizosphere microbial diversity

scientific article published on 07 December 2018

Decay of sewage-associated bacterial communities in fresh and marine environmental waters and sediment

scientific article published on 05 June 2018

Detection and differentiation of Vibrio vulnificus and V. sinaloensis in water and oysters of a Gulf of Mexico estuary.

scientific article published on 13 December 2012

Differential Impacts of Land-Based Sources of Pollution on the Microbiota of Southeast Florida Coral Reefs

scientific article

Differential expression of a sodium-phosphate cotransporter among Vibrio vulnificus strains

scientific article published on 20 October 2013

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

scientific article

Draft Genome Sequences of Four Novel Thermal- and Alkaline-Tolerant Egyptian Rhizobium Strains Nodulating Berseem Clover

scientific article

Durable Long-Term Bacterial Engraftment following Encapsulated Fecal Microbiota Transplantation To Treat Clostridium difficile Infection

scientific article published on 23 July 2019

Dysbiosis patterns during re-induction/salvage versus induction chemotherapy for acute leukemia

scientific article published on 15 April 2019

Effect of Fecal Microbiota Transplantation on Recurrence in Multiply Recurrent Clostridium difficile Infection: A Randomized Trial

scientific article

Environment shapes the fecal microbiome of invasive carp species ⬇️

scientific article published on 12 August 2016

Environmental and animal-associated enterococci.

scientific article published on January 2014

Evaluation of water sampling methodologies for amplicon-based characterization of bacterial community structure

scientific article published on 6 May 2015

Faecal microbiota transplantation for Clostridioides difficile: mechanisms and pharmacology

scientific article published on 25 August 2020

Fecal pollution: new trends and challenges in microbial source tracking using next-generation sequencing

scientific article published on 05 August 2018

Frequencies of heavy metal resistance are associated with land cover type in the Upper Mississippi River

scientific article published on 6 January 2015

Genetic and quantitative assessment of Vibrio vulnificus populations in oyster (Crassostrea virginica) tissues.

scientific article published on 12 May 2011

Geographic isolation of Escherichia coli genotypes in sediments and water of the Seven Mile Creek - A constructed riverine watershed.

scientific article published on 19 August 2015

Gut dysbiosis during antileukemia chemotherapy versus allogeneic hematopoietic cell transplantation

scientific article published on 24 December 2019

Gut-sparing treatment of urinary tract infection in patients at high risk of Clostridium difficile infection

scientific article published on 20 December 2016

High-throughput functional screening reveals low frequency of antibiotic resistance genes in DNA recovered from the Upper Mississippi River

scientific article published on September 2015

Impacts of a changing earth on microbial dynamics and human health risks in the continuum between beach water and sand

scientific article published on 03 July 2019

Increased Denitrification Rates Associated with Shifts in Prokaryotic Community Composition Caused by Varying Hydrologic Connectivity.

scientific article published on 22 November 2017

Influence of Library Composition on SourceTracker Predictions for Community-Based Microbial Source Tracking

scientific article published on 06 December 2018

Influence of Physicochemical Factors on Bacterial Communities Along the Lower Mekong River Assessed by Illumina Next-Generation Sequencing

Influence of short-term changes in dietary sulfur on the relative abundances of intestinal sulfate-reducing bacteria

scientific article published on 27 February 2019

Interaction of gut microbiota with bile acid metabolism and its influence on disease states

scientific article

Interlaboratory Comparison of Real-Time PCR Protocols for Quantification of General Fecal Indicator Bacteria

article

Intestinal lamina propria dendritic cells maintain T cell homeostasis but do not affect commensalism.

scientific article published on 09 September 2013

Intestinal organoids: a model to study the role of microbiota in the colonic tumor microenvironment

scientific article published on 20 November 2020

Levaquin Gets a Pass

scientific article published on 20 December 2019

Loss of microbiota-derived protective metabolites after neutropenic fever

scientific article published on 15 April 2022

Microbes in Beach Sands: Integrating Environment, Ecology and Public Health

scientific article

Microbial Exposure Enhances Immunity to Pathogens Recognized by TLR2 but Increases Susceptibility to Cytokine Storm through TLR4 Sensitization

scientific article published on 01 August 2019

Microbial source tracking markers for detection of fecal contamination in environmental waters: relationships between pathogens and human health outcomes

scientific article

Microbial source tracking to identify human and ruminant sources of faecal pollution in an ephemeral Florida river

scientific article

Network-based approaches for the investigation of microbial community structure and function using metagenomics-based data

scientific article published in May 2022

Next-generation sequencing and culture-based techniques offer complementary insights into fungi and prokaryotes in beach sands.

scientific article published on 23 April 2017

Peculiar citric acid cycle of hydrothermal vent chemolithoautotroph Hydrogenovibrio crunogenus, and insights into carbon metabolism by obligate autotrophs

scientific article published in August 2017

Performance of two quantitative PCR methods for microbial source tracking of human sewage and implications for microbial risk assessment in recreational waters

scientific article

Peri-operative antibiotics acutely and significantly impact intestinal microbiota following bariatric surgery

scientific article published on 23 November 2020

Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies

scientific article published on 01 October 2018

Pre-transplant recovery of microbiome diversity without recovery of the original microbiome

scientific article published on 29 November 2018

Predicting recurrence of Clostridium difficile infection following encapsulated fecal microbiota transplantation

scientific article published on 18 September 2018

Predominant populations of indigenous soybean-nodulating Bradyrhizobium japonicum strains obtained from organic farming systems in Minnesota.

scientific article published on 23 March 2015

Quantitative microbial risk assessment of microbial source tracking markers in recreational water contaminated with fresh untreated and secondary treated sewage.

scientific article

Randomised clinical study: oral aspirin 325 mg daily vs placebo alters gut microbial composition and bacterial taxa associated with colorectal cancer risk

scientific article published on 08 August 2020

Real-time PCR assays for quantification and differentiation of Vibrio vulnificus strains in oysters and water.

scientific article

Regional Similarities and Consistent Patterns of Local Variation in Beach Sand Bacterial Communities throughout the Northern Hemisphere.

scientific article

Role of biliary stent and neoadjuvant chemotherapy in the pancreatic tumor microbiome

scientific article published on 16 October 2021

Seasonal metabolic analysis of marine sediments collected from Moreton Bay in South East Queensland, Australia, using a multi-omics-based approach

article

Sediments and Soils Act as Reservoirs for Taxonomic and Functional Bacterial Diversity in the Upper Mississippi River

scientific article published on 15 February 2016

Sequence-enabled community-based microbial source tracking in surface waters using machine learning classification: A review

scientific article published on 03 September 2020

Signal Disruption Leads to Changes in Bacterial Community Population

scientific article published on 29 March 2019

Site-specific distribution and competitive ability of indigenous bean-nodulating rhizobia isolated from organic fields in Minnesota

scientific article published on 21 September 2015

Sleeve gastrectomy drives persistent shifts in the gut microbiome

scientific article published on 4 January 2017

Species sorting and seasonal dynamics primarily shape bacterial communities in the Upper Mississippi River

scientific article published on 21 October 2014

Specific gut microbiota changes heralding bloodstream infection and neutropenic fever during intensive chemotherapy

scientific article published on 22 August 2019

Stable engraftment of human microbiota into mice with a single oral gavage following antibiotic conditioning.

scientific article published on August 2017

Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation

scientific article published in February 2018

Structure of bacterial communities in soil following cover crop and organic fertilizer incorporation

scientific article

Successful Resolution of Recurrent Clostridium difficile Infection using Freeze-Dried, Encapsulated Fecal Microbiota; Pragmatic Cohort Study

scientific article published on 14 February 2017

Synthesis and Biological Evaluation of Bile Acid Analogues Inhibitory to Clostridium difficile Spore Germination

scientific article

The Diet and Gut Microbial Communities of Two Closely Related Combtooth Blennies, Chasmodes saburrae and Scartella cristata

Toolbox Approaches Using Molecular Markers and 16S rRNA Gene Amplicon Data Sets for Identification of Fecal Pollution in Surface Water.

scientific article

Urea Amendment Decreases Microbial Diversity and Selects for Specific Nitrifying Strains in Eight Contrasting Agricultural Soils.

scientific article published on 4 April 2018

Vancomycin-resistance gene cluster, vanC, in the gut microbiome of acute leukemia patients undergoing intensive chemotherapy

scientific article published on 10 October 2019

Virulence and biodegradation potential of dynamic microbial communities associated with decaying Cladophora in Great Lakes.

scientific article published on 22 September 2016

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