List of works - Peter M. J. Herman

A mixed modeling approach to predict the effect of environmental modification on species distributions.

scientific article

A model of early diagenetic processes from the shelf to abyssal depths

article

A modeling approach to assess coastal management effects on benthic habitat quality: A case study on coastal defense and navigability

article by Francesco Cozzoli et al published January 2017 in Estuarine, Coastal and Shelf Science

A probabilistic framework for windows of opportunity: the role of temporal variability in critical transitions

scientific article published in May 2022

A process based model of cohesive sediment resuspension under bioturbators' influence

scientific article published on 14 March 2019

Abiotic Factors Governing the Establishment and Expansion of Two Salt Marsh Plants in the Yangtze Estuary, China

article

Alternative mechanisms alter the emergent properties of self-organization in mussel beds.

scientific article published on 14 March 2012

Assessing organic matter mineralization, degradability and mixing rate in an ocean margin sediment (Northeast Atlantic) by diagenetic modeling

Behavioral self-organization underlies the resilience of a coastal ecosystem.

scientific article

Benthic community structure and sediment processes on an intertidal flat: results from the ECOFLAT project

Biogenic gradients in algal density affect the emergent properties of spatially self-organized mussel beds.

scientific article

Bridging physics and biology: Reply to comments on "Phase separation driven by density-dependent movement: A novel mechanism for ecological patterns".

scientific article published on 16 November 2016

Carbon flows in the Westerschelde estuary (The Netherlands) evaluated by means of an ecosystem model (MOSES)

Carbon flows through a benthic food web: Integrating biomass, isotope and tracer data

Changed sediment composition prevents recovery of macrobenthic community four years after a shoreface nourishment at the Holland coast

scientific article published in 2023

Changes in diatom patch-size distribution and degradation in a spatially self-organized intertidal mudflat ecosystem.

scientific article published in March 2012

Comparing ecosystem engineering efficiency of two plant species with contrasting growth strategies.

scientific article published in September 2010

Cover versus recovery: contrasting responses of two indicators in seagrass beds

scientific article published on 15 August 2014

Critical transitions in disturbance-driven ecosystems: identifying Windows of Opportunity for recovery

scientific article published on 26 February 2014

DO ALTERNATE STABLE STATES OCCUR IN NATURAL ECOSYSTEMS? EVIDENCE FROM A TIDAL FLAT

article

Denitrification in marine sediments: A model study

Discovery of Sabellaria spinulosa reefs in an intensively fished area of the Dutch Continental Shelf, North Sea

Does scale-dependent feedback explain spatial complexity in salt-marsh ecosystems?

scientific article published on 27 November 2007

Dynamic response of deep-sea sediments to seasonal variations: A model

Eco-Morphological Problems in the Yangtze Estuary and the Western Scheldt

Ecological evaluation of an experimental beneficial use scheme for dredged sediment disposal in shallow tidal waters.

scientific article

Ecosystem Engineering Effects of Aster tripolium and Salicornia procumbens Salt Marsh on Macrofaunal Community Structure

scholarly article by Daphne van der Wal & Peter M. J. Herman published 7 December 2011 in Estuaries and Coasts

Ecosystem engineering creates a new path to resilience in plants with contrasting growth strategies

scientific article published on 30 October 2019

Ecosystem-based coastal defence in the face of global change.

scientific article published on December 2013

Empirical relationships for use in global diagenetic models

article

Estimating estuarine residence times in the Westerschelde (The Netherlands) using a box model with fixed dispersion coefficients

article

Evaluation of the nitrogen isotope-pairing method for measuring benthic denitrification: A simulation analysis

Experimental Evidence for Spatial Self-Organization and Its Emergent Effects in Mussel Bed Ecosystems

scientific article (publication date: 31 October 2008)

Extreme variations of pCO2 and pH in a macrophyte meadow of the Baltic Sea in summer: evidence of the effect of photosynthesis and local upwelling

scientific article (publication date: 2013)

Formation and erosion of biogeomorphological structures: A model study on the tube-building polychaete <i>Lanice conchilega</i>

scientific article published on 16 June 2014

Growth and respiration of Cyprideis torosa Jones 1850 (Crustacea Ostracoda).

scientific article published in September 1982

Guidelines for evaluating performance of oyster habitat restoration should include tidal emersion: reply to Baggett et al.

scientific article published on 13 January 2016

Habitat collapse due to overgrazing threatens turtle conservation in marine protected areas.

scientific article published on 8 January 2014

How superdiffusion gets arrested: ecological encounters explain shift from Lévy to Brownian movement.

scientific article published on 13 November 2013

Identifying knowledge gaps hampering application of intertidal habitats in coastal protection: Opportunities & steps to take

scholarly article by Tjeerd J. Bouma et al published May 2014 in Coastal Engineering

Impacts of bottom and suspended cultures of mussels Mytilus spp. on the surrounding sedimentary environment and macrobenthic biodiversity

article

Latitudinal Patterns in European Seagrass Carbon Reserves: Influence of Seasonal Fluctuations versus Short-Term Stress and Disturbance Events.

scientific article published in February 2018

Low-canopy seagrass beds still provide important coastal protection services

scientific article

Lévy walks evolve through interaction between movement and environmental complexity.

scientific article published in June 2011

Maintaining Tropical Beaches with Seagrass and Algae: A Promising Alternative to Engineering Solutions

scientific article published on 15 November 2018

Major biological processes in European tidal estuaries: a synthesis of the JEEP-92 Project

Modeling 210 Pb-derived mixing activity in ocean margin sediments: Diffusive versus nonlocal mixing

Modeling Decadal Salt Marsh Development: Variability of the Salt Marsh Edge Under Influence of Waves and Sediment Availability

scientific article published on 27 December 2021

Nematode distribution in ocean margin sediments of the Goban Spur (northeast Atlantic) in relation to sediment geochemistry

scholarly article by Karline Soetaert et al published September 1997 in Deep-Sea Research. Part 1: Oceanographic Research Papers

Nitrate and phosphate affect cultivability of cyanobacteria from environments with low nutrient levels

scientific article published on June 2005

Nitrogen dynamics in the Westerschelde estuary (SW Netherlands) estimated by means of the ecosystem model MOSES

article

Numerical modelling of the shelf break ecosystem: reproducing benthic and pelagic measurements

On the coupling of benthic and pelagic biogeochemical models

article

On the potential of plant species invasion influencing bio-geomorphologic landscape formation in salt marshes

article

Organic matter processing in tidal estuaries

article

Organisation of microbenthic communities in intertidal Estuarine flats, a case study from the molenplaat (Westerschelde estuary, The Netherlands)

Organism-sediment interactions govern post-hypoxia recovery of ecosystem functioning

scientific article published on 21 November 2012

Oxygenation and organic-matter preservation in marine sediments: Direct experimental evidence from ancient organic carbon–rich deposits

article

Pattern formation at multiple spatial scales drives the resilience of mussel bed ecosystems

scientific article

Persistence despite omnivory: benthic communities and the discrepancy between theory and observation

scientific article published in 2006

Phase separation driven by density-dependent movement: A novel mechanism for ecological patterns

scientific article published on 16 July 2016

Phase separation explains a new class of self-organized spatial patterns in ecological systems.

scientific article published on July 2013

Potential for Sudden Shifts in Transient Systems: Distinguishing Between Local and Landscape-Scale Processes

Problems in meiofauna energy-flow studies

Processes limiting mussel bed restoration in the Wadden-Sea

scholarly article by Hélène de Paoli published in September 2015

Protecting marine biodiversity to preserve ecosystem functioning: A tribute to Carlo Heip

scholarly article by Peter Herman published in April 2015

Reactive transport in surface sediments. I. Model complexity and software quality

article

Reactive transport in surface sediments. II. Media: an object-oriented problem-solving environment for early diagenesis

Reply to the comment by Nielsen et al

Salt marsh establishment in poorly consolidated muddy systems: effects of surface drainage, elevation, and plant age

scientific article published on 27 September 2021

Scale-dependent feedback and regular spatial patterns in young mussel beds

scientific article

Seafloor ecosystem functioning: the importance of organic matter priming

scientific article published on 18 July 2009

Seagrass coastal protection services reduced by invasive species expansion and megaherbivore grazing

scientific article

Seasonal changes in environmental variables, biomass, production and nutrient contents in two contrasting tropical intertidal seagrass beds in South Sulawesi, Indonesia.

scientific article

Secondary production of an intertidal mussel (Mytilus edulis L.) population in the Eastern Scheldt (S.W. Netherlands)

Seedling establishment in a dynamic sedimentary environment: a conceptual framework using mangroves.

scientific article

Self-organization and vegetation collapse in salt marsh ecosystems

scientific article

Shellfish Reefs Increase Water Storage Capacity on Intertidal Flats Over Extensive Spatial Scales

Short and mid-long term effects of cockle-dredging on non-target macrobenthic species: a before-after-control-impact experiment on a tidal mudflat in the Oosterschelde (The Netherlands)

scientific article published in 2011

Spatial distribution of detrital resources determines the outcome of competition between bacteria and a facultative detritivorous worm

article by Paul van Nugteren et al published 12 June 2009 in Limnology and Oceanography

Spatial self-organization on intertidal mudflats through biophysical stress divergence.

scientific article published in July 2010

Spatial variability in macrofaunal diet composition and grazing pressure on microphytobenthos in intertidal areas

scientific article

Sprouting as a gardening strategy to obtain superior supplementary food: evidence from a seed-caching marine worm

scientific article published in December 2016

Stability of a Tidal Marsh Under Very High Flow Velocities and Implications for Nature-Based Flood Defense

scientific article published in 2022

Studies of the life-history and energetics of marine and brackish-water nematodes : I. Demography of Monhystera disjuncta at different temperature and feeding conditions.

scientific article published in November 1988

Studies of the life-history and energetics of marine and brackish-water nematodes : II. Production, respiration and food uptake by Monhystera disjuncta.

scientific article published in December 1988

Sulfur and iron speciation in surface sediments along the northwestern margin of the Black Sea

Surviving in Changing Seascapes: Sediment Dynamics as Bottleneck for Long-Term Seagrass Presence

The European Marine Observation and Data Network (EMODnet): Visions and Roles of the Gateway to Marine Data in Europe

scientific article published on 12 July 2019

The Wadden Sea Region: Towards a science for sustainable development

article

The combined influence of body size and density on cohesive sediment resuspension by bioturbators.

scientific article published in March 2018

The fate of intertidal microphytobenthos carbon: An in situ13C-labeling study

The influence of local- and landscape-scale processes on spatial self-organization in estuarine ecosystems

scientific article

The predictability of biological populations and communities: an example from the meiobenthos

The production of Cyprideis torosa Jones 1850 (Crustacea, Ostracoda).

scientific article published in June 1983

The seafloor as the ultimate sediment trap—using sediment properties to constrain benthic–pelagic exchange processes at the Goban Spur

Tiny is mighty: seagrass beds have a large role in the export of organic material in the tropical coastal zone

scientific article

Top-down control inhibits spatial self-organization of a patterned landscape.

scientific article published on February 2011

Variations in storm-induced bed level dynamics across intertidal flats

scientific article published on 30 July 2020

Vegetation recovery in tidal marshes reveals critical slowing down under increased inundation

scientific article

Water motion and vegetation control the pH dynamics in seagrass‐dominated bays

scientific article published in 2019

Wave Attenuation by Two Contrasting Ecosystem Engineering Salt Marsh Macrophytes in the Intertidal Pioneer Zone

scholarly article by Tom Ysebaert et al published 29 October 2011 in Wetlands

Wave effects on seedling establishment of three pioneer marsh species: survival, morphology and biomechanics

scientific article published on 01 February 2020

Zooming in and out: Scale dependence of extrinsic and intrinsic factors affecting salt marsh erosion

scholarly article by Heng Wang et al published July 2017 in Journal of geophysical research. Earth surface

List of works by Peter M. J. Herman

A mixed modeling approach to predict the effect of environmental modification on species distributions.

A model of early diagenetic processes from the shelf to abyssal depths

A modeling approach to assess coastal management effects on benthic habitat quality: A case study on coastal defense and navigability

A probabilistic framework for windows of opportunity: the role of temporal variability in critical transitions

A process based model of cohesive sediment resuspension under bioturbators' influence

Abiotic Factors Governing the Establishment and Expansion of Two Salt Marsh Plants in the Yangtze Estuary, China

Alternative mechanisms alter the emergent properties of self-organization in mussel beds.

Assessing organic matter mineralization, degradability and mixing rate in an ocean margin sediment (Northeast Atlantic) by diagenetic modeling

Behavioral self-organization underlies the resilience of a coastal ecosystem.

Benthic community structure and sediment processes on an intertidal flat: results from the ECOFLAT project

Biogenic gradients in algal density affect the emergent properties of spatially self-organized mussel beds.

Bridging physics and biology: Reply to comments on "Phase separation driven by density-dependent movement: A novel mechanism for ecological patterns".

Carbon flows in the Westerschelde estuary (The Netherlands) evaluated by means of an ecosystem model (MOSES)

Carbon flows through a benthic food web: Integrating biomass, isotope and tracer data

Changed sediment composition prevents recovery of macrobenthic community four years after a shoreface nourishment at the Holland coast

Changes in diatom patch-size distribution and degradation in a spatially self-organized intertidal mudflat ecosystem.

Comparing ecosystem engineering efficiency of two plant species with contrasting growth strategies.

Cover versus recovery: contrasting responses of two indicators in seagrass beds

Critical transitions in disturbance-driven ecosystems: identifying Windows of Opportunity for recovery

DO ALTERNATE STABLE STATES OCCUR IN NATURAL ECOSYSTEMS? EVIDENCE FROM A TIDAL FLAT

Denitrification in marine sediments: A model study

Discovery of Sabellaria spinulosa reefs in an intensively fished area of the Dutch Continental Shelf, North Sea

Does scale-dependent feedback explain spatial complexity in salt-marsh ecosystems?

Dynamic response of deep-sea sediments to seasonal variations: A model

Eco-Morphological Problems in the Yangtze Estuary and the Western Scheldt

Ecological evaluation of an experimental beneficial use scheme for dredged sediment disposal in shallow tidal waters.

Ecosystem Engineering Effects of Aster tripolium and Salicornia procumbens Salt Marsh on Macrofaunal Community Structure

Ecosystem engineering creates a new path to resilience in plants with contrasting growth strategies

Ecosystem-based coastal defence in the face of global change.

Empirical relationships for use in global diagenetic models

Estimating estuarine residence times in the Westerschelde (The Netherlands) using a box model with fixed dispersion coefficients

Evaluation of the nitrogen isotope-pairing method for measuring benthic denitrification: A simulation analysis

Experimental Evidence for Spatial Self-Organization and Its Emergent Effects in Mussel Bed Ecosystems

Extreme variations of pCO2 and pH in a macrophyte meadow of the Baltic Sea in summer: evidence of the effect of photosynthesis and local upwelling

Formation and erosion of biogeomorphological structures: A model study on the tube-building polychaete <i>Lanice conchilega</i>

Growth and respiration of Cyprideis torosa Jones 1850 (Crustacea Ostracoda).

Guidelines for evaluating performance of oyster habitat restoration should include tidal emersion: reply to Baggett et al.

Habitat collapse due to overgrazing threatens turtle conservation in marine protected areas.

How superdiffusion gets arrested: ecological encounters explain shift from Lévy to Brownian movement.

Identifying knowledge gaps hampering application of intertidal habitats in coastal protection: Opportunities & steps to take

Impacts of bottom and suspended cultures of mussels Mytilus spp. on the surrounding sedimentary environment and macrobenthic biodiversity

Latitudinal Patterns in European Seagrass Carbon Reserves: Influence of Seasonal Fluctuations versus Short-Term Stress and Disturbance Events.

Low-canopy seagrass beds still provide important coastal protection services

Lévy walks evolve through interaction between movement and environmental complexity.

Maintaining Tropical Beaches with Seagrass and Algae: A Promising Alternative to Engineering Solutions

Major biological processes in European tidal estuaries: a synthesis of the JEEP-92 Project

Modeling 210 Pb-derived mixing activity in ocean margin sediments: Diffusive versus nonlocal mixing

Modeling Decadal Salt Marsh Development: Variability of the Salt Marsh Edge Under Influence of Waves and Sediment Availability

Nematode distribution in ocean margin sediments of the Goban Spur (northeast Atlantic) in relation to sediment geochemistry

Nitrate and phosphate affect cultivability of cyanobacteria from environments with low nutrient levels

Nitrogen dynamics in the Westerschelde estuary (SW Netherlands) estimated by means of the ecosystem model MOSES

Numerical modelling of the shelf break ecosystem: reproducing benthic and pelagic measurements

On the coupling of benthic and pelagic biogeochemical models

On the potential of plant species invasion influencing bio-geomorphologic landscape formation in salt marshes

Organic matter processing in tidal estuaries

Organisation of microbenthic communities in intertidal Estuarine flats, a case study from the molenplaat (Westerschelde estuary, The Netherlands)

Organism-sediment interactions govern post-hypoxia recovery of ecosystem functioning

Oxygenation and organic-matter preservation in marine sediments: Direct experimental evidence from ancient organic carbon–rich deposits

Pattern formation at multiple spatial scales drives the resilience of mussel bed ecosystems

Persistence despite omnivory: benthic communities and the discrepancy between theory and observation

Phase separation driven by density-dependent movement: A novel mechanism for ecological patterns

Phase separation explains a new class of self-organized spatial patterns in ecological systems.

Potential for Sudden Shifts in Transient Systems: Distinguishing Between Local and Landscape-Scale Processes

Problems in meiofauna energy-flow studies

Processes limiting mussel bed restoration in the Wadden-Sea

Protecting marine biodiversity to preserve ecosystem functioning: A tribute to Carlo Heip

Reactive transport in surface sediments. I. Model complexity and software quality

Reactive transport in surface sediments. II. Media: an object-oriented problem-solving environment for early diagenesis

Reply to the comment by Nielsen et al

Salt marsh establishment in poorly consolidated muddy systems: effects of surface drainage, elevation, and plant age

Scale-dependent feedback and regular spatial patterns in young mussel beds

Seafloor ecosystem functioning: the importance of organic matter priming

Seagrass coastal protection services reduced by invasive species expansion and megaherbivore grazing

Seasonal changes in environmental variables, biomass, production and nutrient contents in two contrasting tropical intertidal seagrass beds in South Sulawesi, Indonesia.

Secondary production of an intertidal mussel (Mytilus edulis L.) population in the Eastern Scheldt (S.W. Netherlands)

Seedling establishment in a dynamic sedimentary environment: a conceptual framework using mangroves.

Self-organization and vegetation collapse in salt marsh ecosystems

Shellfish Reefs Increase Water Storage Capacity on Intertidal Flats Over Extensive Spatial Scales

Short and mid-long term effects of cockle-dredging on non-target macrobenthic species: a before-after-control-impact experiment on a tidal mudflat in the Oosterschelde (The Netherlands)