Search filters

List of works by Martin von Bergen

25-Hydroxyvitamin D3 Synthesis by Enzymatic Steroid Side-Chain Hydroxylation with Water.

scientific article

A H2 -oxidizing, 1,2,3-trichlorobenzene-reducing multienzyme complex isolated from the obligately organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1.

scientific article published on 19 June 2017

A Retentive Memory of Tetrachloroethene Respiration in Sulfurospirillum halorespirans - involved Proteins and a possible link to Acetylation of a Two-Component Regulatory System.

scientific article published in April 2018

A cleavable cytolysin-neuropeptide Y bioconjugate enables specific drug delivery and demonstrates intracellular mode of action

scientific article

A glycosyl hydrolase family 16 gene is responsible for the endogenous production of β-1,3-glucanases within decapod crustaceans

scientific article published on 27 May 2015

A multi-omics approach reveals mechanisms of nanomaterial toxicity and structure-activity relationships in alveolar macrophages

scientific article published on 27 November 2019

A patchwork pathway for oxygenase-independent degradation of side chain containing steroids

scientific article published on 21 September 2017

ATP-Dependent C-F Bond Cleavage Allows the Complete Degradation of 4-Fluoroaromatics without Oxygen

scientific article

Accumulation of distinct persistent organic pollutants is associated with adipose tissue inflammation

scientific article published on 23 September 2020

Adipose tissue derived bacteria are associated with inflammation in obesity and type 2 diabetes

scientific article published on 21 April 2020

Advanced tool for characterization of microbial cultures by combining cytomics and proteomics

scientific article published on 30 July 2010

Aerobic Toluene Degraders in the Rhizosphere of a Constructed Wetland Model Show Diurnal Polyhydroxyalkanoate Metabolism

scientific article published on 29 April 2016

Allergen-Induced IL-6 Regulates IL-9/IL-17A Balance in CD4+ T Cells in Allergic Airway Inflammation

scientific article

An MRM-Based Multiplexed Quantification Assay for Human Adipokines and Apolipoproteins

scientific article published on 11 February 2020

An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization

scientific article published on 25 October 2019

An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research

scientific article published on 30 January 2018

An unusual strategy for the anoxic biodegradation of phthalate

scientific article published on 8 July 2016

Anaerobic Microbial Degradation of Hydrocarbons: From Enzymatic Reactions to the Environment

scientific article

Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers

scientific article published on 13 January 2015

Analysis of structure, function, and activity of a benzene-degrading microbial community

scientific article published on 11 March 2013

Analysis of the STAT3 interactome using in-situ biotinylation and SILAC

scientific article published on 04 September 2013

Anthraquinones inhibit tau aggregation and dissolve Alzheimer's paired helical filaments in vitro and in cells

scientific article

Aromatizing cyclohexa-1,5-diene-1-carbonyl-coenzyme A oxidase. Characterization and its role in anaerobic aromatic metabolism

scientific article published on 27 May 2008

Assessment of maternal drug intake by urinary bio monitoring during pregnancy and postpartally until the third perinatal year

scientific article published on 22 December 2015

Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies

scientific article published on 20 May 2011

Attenuation of Postoperative Acute Liver Failure by Mesenchymal Stem Cell Treatment Due to Metabolic Implications.

scientific article published on 13 March 2015

Autoproteolytic stability of a trypsin from the marine crab Cancer pagurus

scientific article

Bacteria dominate the short-term assimilation of plant-derived N in soil

article

Benzo[a]pyrene affects Jurkat T cells in the activated state via the antioxidant response element dependent Nrf2 pathway leading to decreased IL-2 secretion and redirecting glutamine metabolism.

scientific article published on 10 April 2013

Benzylsuccinate Synthase is Post-Transcriptionally Regulated in the Toluene-Degrading Denitrifier Magnetospirillum sp. Strain 15-1

scientific article published on 07 May 2020

Bidirectional role of NLRP3 during acute and chronic cholestatic liver injury

scientific article published on 04 August 2020

Biochemical Foundations of Health and Energy Conservation in Hibernating Free-ranging Subadult Brown Bear Ursus arctos

scientific article published on 8 September 2016

Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities

scientific article

Calculation of partial isotope incorporation into peptides measured by mass spectrometry

scientific article

Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer

scientific article

Characterization of Alzheimer's-like paired helical filaments from the core domain of tau protein using solid-state NMR spectroscopy

scientific article

Characterization of a multianalyte GC-MS/MS procedure for detecting and quantifying polycyclic aromatic hydrocarbons (PAHs) and PAH derivatives from air particulate matter for an improved risk assessment

scientific article published on 29 August 2019

Characterization of chemical-induced sterile inflammation in vitro: application of the model compound ketoconazole in a human hepatic co-culture system

scientific article published on 10 March 2016

Chlorinated benzenes cause concomitantly oxidative stress and induction of apoptotic markers in lung epithelial cells (A549) at nonacute toxic concentrations.

scientific article published on 21 December 2010

Clostridium ramosum regulates enterochromaffin cell development and serotonin release

scientific article published in Scientific Reports

Combination of Metabolomics with Cellular Assays Reveals New Biomarkers and Mechanistic Insights on Xenoestrogenic Exposures in MCF-7 Cells.

scientific article published on 12 August 2016

Combined Proteomic and Metabolomic Profiling of Serum Reveals Association of the Complement System with Obesity and Identifies Novel Markers of Body Fat Mass Changes ⬇️

scientific article published on August 29, 2011

Combined Serum Proteomic and Metabonomic Profiling After Laparoscopic Sleeve Gastrectomy in Children and Adolescents ⬇️

scientific article published on September 29, 2011

Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47.

scientific article published on January 2010

Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph

scientific article

Common and phylogenetically widespread coding for peptides by bacterial small RNAs

scientific article published on 21 July 2017

Common and phylogenetically widespread coding for peptides by bacterial small RNAs

Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy

scientific article published on 31 July 2019

Comparative analysis of the venom proteomes of Vipera ammodytes ammodytes and Vipera ammodytes meridionalis

scientific article

Comparative performance evaluation of multi-metal resistant fungal strains for simultaneous removal of multiple hazardous metals.

scientific article

Comparison and optimization of methods for the simultaneous extraction of DNA, RNA, proteins, and metabolites

scientific article

Comparison of metabolite networks from four German population-based studies

article

Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments

scientific article published in June 2009

Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM).

scientific article published on 13 November 2013

Compartment resolved reference proteome map from highly purified naïve, activated, effector, and memory CD8⁺ murine immune cells.

scientific article published on 03 March 2015

Complete nitrification by Nitrospira bacteria

scientific article

Concentration–response concept in ecotoxicoproteomics: Effects of different phenanthrene concentrations to the zebrafish (Danio rerio) embryo proteome

article

Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data

scientific article

Corrigendum to Tracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities

scientific article published on 25 May 2020

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

scientific article published on 15 December 2021

Cyanate as an energy source for nitrifiers

scientific article

Cyclohexanecarboxyl-coenzyme A (CoA) and cyclohex-1-ene-1-carboxyl-CoA dehydrogenases, two enzymes involved in the fermentation of benzoate and crotonate in Syntrophus aciditrophicus

scientific article published on 10 May 2013

DIGE Proteome Analysis Reveals Suitability of Ischemic Cardiac In Vitro Model for Studying Cellular Response to Acute Ischemia and Regeneration ⬇️

scientific article published on February 22, 2012

DIGE-based protein expression analysis of B[a]P-exposed hepatoma cells reveals a complex stress response including alterations in oxidative stress, cell cycle control, and cytoskeleton motility at toxic and subacute concentrations

scientific article published on 21 December 2010

Danger signal extracellular calcium initiates differentiation of monocytes into SPP1/osteopontin-producing macrophages

scientific article published on 12 January 2022

Decarboxylating and nondecarboxylating glutaryl-coenzyme A dehydrogenases in the aromatic metabolism of obligately anaerobic bacteria

scientific article

Decimal place slope, a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species

scientific article

Declining capacity of starving Delftia acidovorans MC1 to degrade phenoxypropionate herbicides correlates with oxidative modification of the initial enzyme

scientific article

Dehalococcoides mccartyi strain DCMB5 Respires a broad spectrum of chlorinated aromatic compounds

scientific article published on 7 November 2014

Desulfitobacterium contributes to the microbial transformation of 2,4,5-T by methanogenic enrichment cultures from a Vietnamese active landfill

article

Detection, quantification and identification of fungal extracellular laccases using polyclonal antibody and mass spectrometry

Di-(2-Ethylhexyl)-Phthalate (DEHP) Causes Impaired Adipocyte Function and Alters Serum Metabolites

scientific article (publication date: 2015)

Differential cellular metabolite alterations in HaCaT cells caused by exposure to the aryl hydrocarbon receptor-binding polycyclic aromatic hydrocarbons chrysene, benzo[a]pyrene and dibenzo[a,l]pyrene

scientific article published on 16 September 2016

Differential contribution of nitrifying prokaryotes to groundwater nitrification

scientific article published in 2023

Discrimination of different species from the genus Drosophila by intact protein profiling using matrix-assisted laser desorption ionization mass spectrometry

scientific article

Disease Development Is Accompanied by Changes in Bacterial Protein Abundance and Functions in a Refined Model of Dextran Sulfate Sodium (DSS)-Induced Colitis

scientific article published on 26 March 2019

Disturbed gut microbiota and bile homeostasis in Giardia-infected mice contributes to metabolic dysregulation and growth impairment

scientific article published on 01 October 2020

Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps

scientific article

Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence.

scientific article published on 17 April 2015

Early-onset childhood atopic dermatitis is related to NLRP2 repression.

scientific article

Ecological Functions of Agricultural Soil Bacteria and Microeukaryotes in Chitin Degradation: A Case Study ⬇️

scientific article published on 20 June 2019

Effects of Five Substances with Different Modes of Action on Cathepsin H, C and L Activities in Zebrafish Embryos

scientific article published on 17 October 2019

Effects of ceftiofur treatment on the susceptibility of commensal porcine E.coli--comparison between treated and untreated animals housed in the same stable

scientific article published on 15 October 2015

Effects of chronic dietary exposure of zinc oxide nanoparticles on the serum protein profile of juvenile common carp (Cyprinus carpio L.).

scientific article

Elevated Gestational IL-13 During Fetal Development Is Associated With Hyperactivity and Inattention in Eight-Year-Old Children

scientific article published on 23 July 2019

Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach

scientific article

Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP).

scientific article

Endogenous metabolites and inflammasome activity in early childhood and links to respiratory diseases

scientific article published on 7 March 2015

Enhancing metaproteomics--The value of models and defined environmental microbial systems

scientific article published in December 2015

Enrichment and identification of small proteins in a simplified human gut microbiome

scientific article published on 10 December 2019

Enzymes involved in phthalate degradation in sulphate-reducing bacteria

scientific article published on 23 May 2019

Enzymes involved in the anaerobic degradation of meta-substituted halobenzoates

scientific article published on 01 November 2011

Establishing a reliable multiple reaction monitoring-based method for the quantification of obesity-associated comorbidities in serum and adipose tissue requires intensive clinical validation

scientific article

Ethnomedicinal survey and in vitro confirmation of anti-inflammatory and antispasmodic properties of the termite strain Macrotermes bellicosus used in traditional medicine in the Republic of Benin

scientific article published on 22 February 2020

Evaluation of the tolerability and immunogenicity of ultraviolet C‐irradiated autologous platelets in a dog model ⬇️

scientific article published on March 8, 2012

Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP).

scientific article

Expression cartography of human tissues using self organizing maps ⬇️

scientific article published on July 27, 2011

Fatty Acid Oxidation Compensates for Lipopolysaccharide-Induced Warburg Effect in Glucose-Deprived Monocytes

scientific article

Following the community development of SIHUMIx - a new intestinal in vitro model for bioreactor use

scientific article published on 10 January 2020

Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics

scientific article published on 01 February 2020

Functional analysis of an anaerobic m-xylene-degrading enrichment culture using protein-based stable isotope probing

scientific article

Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity

scientific article

Functional metaproteome analysis of protein extracts from contaminated soil and groundwater

scientific article published on 31 May 2007

Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss

scientific article published on 07 February 2020

Genomic, Proteomic, and Metabolite Characterization of Gemfibrozil-Degrading Organism Bacillus sp. GeD10.

scientific article published on 18 December 2015

Global hairpin folding of tau in solution

scientific article published in February 2006

Glucocorticoid Treatment Leads to Aberrant Ion and Macromolecular Transport in Regenerating Zebrafish Fins

scientific article published on 04 October 2019

Gut microbial functional maturation and succession during human early life.

scientific article published on 24 April 2018

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

Hepatic co-cultures in vitro reveal suitable to detect Nrf2-mediated oxidative stress responses on the bladder carcinogen o-anisidine.

scientific article published on 12 January 2017

High metabolic in vivo stability and bioavailability of a palmitoylated ghrelin receptor ligand assessed by mass spectrometry

scientific article published on 10 December 2014

Higher plasma levels of lysophosphatidylcholine 18:0 are related to a lower risk of common cancers in a prospective metabolomics study

scientific article published on 28 January 2016

Highly populated turn conformations in natively unfolded tau protein identified from residual dipolar couplings and molecular simulation

scientific article published on 27 March 2007

Human fibroblasts support the expansion of IL-17-producing T cells via up-regulation of IL-23 production by dendritic cells

scientific article published on 10 June 2010

Identification and characterization of 2-naphthoyl-coenzyme A reductase, the prototype of a novel class of dearomatizing reductases

scientific article published on 7 May 2013

Identification and characterization of a re-citrate synthase in Dehalococcoides strain CBDB1

scientific article

Identification and characterization of a succinyl-coenzyme A (CoA):benzoate CoA transferase in Geobacter metallireducens

scientific article published on 9 March 2012

Identification of T helper (Th)1- and Th2-associated antigens of Cryptococcus neoformans in a murine model of pulmonary infection

scientific article published on 8 February 2018

Identification of a multi-protein reductive dehalogenase complex in Dehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement

scientific article published on 31 December 2015

Identification of harmless and pathogenic algae of the genus Prototheca by MALDI-MS.

scientific article

Identification of lipidomic biomarkers for coexposure to subtoxic doses of benzo[a]pyrene and cadmium: the toxicological cascade biomarker approach

scientific article published on 18 August 2014

Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.

scientific article published on 9 May 2013

Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome

scientific article published on 26 October 2017

Identification of pesticide exposure-induced metabolic changes in mosquito larvae

scientific article published on 04 July 2018

Impact of vitamin B12 on formation of the tetrachloroethene reductive dehalogenase in Desulfitobacterium hafniense strain Y51.

scientific article

Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments.

scientific article

In Depth Quantitative Proteomic and Transcriptomic Characterization of Human Adipocyte Differentiation Using the SGBS Cell Line

scientific article published on 08 May 2020

In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model.

scientific article published on 30 November 2015

Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP).

scientific article

Inducible expression of Tau repeat domain in cell models of tauopathy: aggregation is toxic to cells but can be reversed by inhibitor drugs

scientific article

Insight into the modulation of intestinal proteome of juvenile common carp (Cyprinus carpio L.) after dietary exposure to ZnO nanoparticles.

scientific article

Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology

scientific article

Integration of conventional quantitative and phospho-proteomics reveals new elements in activated Jurkat T-cell receptor pathway maintenance

scientific article

Interactions between bile salts, gut microbiota, and hepatic innate immunity.

scientific article

Interactions of ginkgolides A and B with a recombinant human prion protein

scientific article published on 01 March 2010

Interactions of recombinant prions with compounds of therapeutical significance

scientific article published on 30 March 2006

Intrinsic fluorescent detection of tau conformation and aggregation

scientific article published in January 2005

Limitations in detection of 15N incorporation by mass spectrometry in protein-based stable isotope probing (protein-SIP).

scientific article published on 17 March 2013

MALDI-typing of infectious algae of the genus Prototheca using SOM portraits

scientific article

MEST mediates the impact of prenatal bisphenol A exposure on long-term body weight development

scientific article published on 20 April 2018

Maternal and cord blood miR-223 expression associates with prenatal tobacco smoke exposure and low regulatory T-cell numbers

scientific article published on 24 August 2013

Maternal paraben exposure triggers childhood overweight development

scientific article published on 11 February 2020

Maternal phthalate exposure promotes allergic airway inflammation over 2 generations through epigenetic modifications

scientific article published on 6 April 2017

Maximization of cell viability rather than biocatalyst activity improves whole-cell ω-oxyfunctionalization performance.

scientific article published on 7 November 2016

Mechanistic insight to mycoremediation potential of a metal resistant fungal strain for removal of hazardous metals from multimetal pesticide matrix

scientific article published on 06 March 2020

Mechanistic insights into the global response to phenol in the phenol-biodegrading strain Pseudomonas sp. M1 revealed by quantitative proteomics

scientific article published in January 2007

Membrane vesicle formation as a multiple-stress response mechanism enhances Pseudomonas putida DOT-T1E cell surface hydrophobicity and biofilm formation.

scientific article published on 29 June 2012

Mesenchymal stem cells correct haemodynamic dysfunction associated with liver injury after extended resection in a pig model.

scientific article

MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics

scientific article published on December 2014

Metabolic in Vivo Labeling Highlights Differences of Metabolically Active Microbes from the Mucosal Gastrointestinal Microbiome between High-Fat and Normal Chow Diet

scientific article

Metabolomic biomarkers correlating with hepatic lipidosis in dairy cows

scientific article

Metabolomic profiling reveals correlations between spermiogram parameters and the metabolites present in human spermatozoa and seminal plasma

scientific article published on 20 February 2019

Metabolomics reveals impact of seven functional foods on metabolic pathways in a gut microbiota model

scientific article published on 03 January 2020

Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria

scientific article

Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation.

scientific article

Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localization resolved species distribution and enzymatic functionalities.

scientific article

Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation

scientific article published on 23 July 2015

Methylamine as a nitrogen source for microorganisms from a coastal marine environment.

scientific article published on 28 February 2017

Microbial interactions during residual oil and n-fatty acid metabolism by a methanogenic consortium

scientific article published on 7 March 2012

Microbial minorities modulate methane consumption through niche partitioning

scientific article

Microbiome manipulation modifies sex-specific risk for autoimmunity

scientific article

Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure

article by Manuel Ferrer et al published January 2013 in Environmental Microbiology

Microdialysis Sampling from Wound Fluids Enables Quantitative Assessment of Cytokines, Proteins, and Metabolites Reveals Bone Defect-Specific Molecular Profiles

scientific article

Mining SOM expression portraits: feature selection and integrating concepts of molecular function ⬇️

scientific article published on October 8, 2012

Monitoring of drug intake during pregnancy by questionnaires and LC-MS/MS drug urine screening: evaluation of both monitoring methods

scientific article published on 28 December 2014

Mono(2-ethylhexyl) phthalate (MEHP) and mono(2-ethyl-5-oxohexyl) phthalate (MEOHP) but not di(2-ethylhexyl) phthalate (DEHP) bind productively to the peroxisome proliferator-activated receptor γ

scientific article published on 01 January 2019

Mucosal-associated invariant T-Cell (MAIT) activation is altered by chlorpyrifos- and glyphosate-treated commensal gut bacteria

scientific article published on 01 December 2020

Occupational IgE-Mediated Softwood Allergy: Characterization of the Causative Allergen ⬇️

scientific article published on 07 October 2011

One-megadalton metalloenzyme complex in involved in benzene ring reduction beyond the biological redox window

scientific article published on 23 January 2019

Optimization of metabolomics of defined in vitro gut microbial ecosystems.

scientific article

Optimization of parameters for coverage of low molecular weight proteins

scientific article published on 28 August 2010

Osteoblast-released Matrix Vesicles, Regulation of Activity and Composition by Sulfated and Non-sulfated Glycosaminoglycans.

scientific article published on 23 November 2015

PIPINO: A Software Package to Facilitate the Identification of Protein-Protein Interactions from Affinity Purification Mass Spectrometry Data

scientific article

Pathway and time-resolved benzo[a]pyrene toxicity on Hepa1c1c7 cells at toxic and subtoxic exposure.

scientific article

Peptide NMHRYPNQ of the cellular prion protein (PrP(C)) inhibits aggregation and is a potential key for understanding prion-prion interactions

scientific article

Phenol degradation in the strictly anaerobic iron-reducing bacterium Geobacter metallireducens GS-15.

scientific article

Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources

scientific article published on 14 April 2014

Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part II. Mimicking environmental conditions during cultivation in retentostats

scientific article published on 13 April 2014

Pilot Study on Mass Spectrometry-Based Analysis of the Proteome of CD34⁺CD123⁺ Progenitor Cells for the Identification of Potential Targets for Immunotherapy in Acute Myeloid Leukemia.

scientific article published on 12 February 2018

Prediction of flocculation ability of brewing yeast inoculates by flow cytometry, proteome analysis, and mRNA profiling

scientific article

Prenatal VOC exposure and redecoration are related to wheezing in early infancy

scientific article published on 18 September 2014

Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation

scientific article published on 28 June 2016

Prenatal phthalate exposure associates with low regulatory T-cell numbers and atopic dermatitis in early childhood: Results from the LINA mother-child study

scientific article published on 5 November 2016

Prospects and challenges of multi-omics data integration in toxicology

scientific article published on 08 February 2020

Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium

scientific article

Protein-SIP in environmental studies

scientific article published on 23 April 2016

Protein-based stable isotope probing

scientific article published on 18 November 2010

Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures

scientific article published on 19 June 2008

Protein-based stable isotope probing (protein-SIP) in functional metaproteomics

scientific article published on 15 March 2012

Proteome and phosphoproteome analysis of commensally induced dendritic cell maturation states.

scientific article published on 15 November 2017

Proteome changes in human bronchoalveolar cells following styrene exposure indicate involvement of oxidative stress in the molecular-response mechanism

scientific article

Proteome data on the microbial microbiome of grasshopper feces

scientific article

Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor

scientific article

Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates

scientific article

Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor

scientific article

Proteomic definition of human mucosal-associated invariant T cells determines their unique molecular effector phenotype.

scientific article

Proteomics analysis of dendritic cell activation by contact allergens reveals possible biomarkers regulated by Nrf2.

scientific article published on 2 November 2016

Proteomics and metabolomics for in situ monitoring of wound healing.

scientific article

Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates

scientific article published on 21 September 2015

Pseudechis australis venomics: adaptation for a defense against microbial pathogens and recruitment of body transferrin

scientific article

Pseudomonas spp. are key players in agricultural biogas substrate degradation

scientific article published on 06 September 2019

Pulsed (13)C2-Acetate Protein-SIP Unveils Epsilonproteobacteria as Dominant Acetate Utilizers in a Sulfate-Reducing Microbial Community Mineralizing Benzene

scientific article published on 4 February 2016

Purification and characterization of active-site components of the putative p-cresol methylhydroxylase membrane complex from Geobacter metallireducens

scientific article published on 25 July 2008

Quantification of glyphosate and aminomethylphosphonic acid from microbiome reactor fluids

scientific article published on 01 April 2020

Quantitative proteomics reveals altered expression of extracellular matrix related proteins of human primary dermal fibroblasts in response to sulfated hyaluronan and collagen applied as artificial extracellular matrix

scientific article

Quantitative proteomics reveals novel functions of osteoclast-associated receptor in STAT signaling and cell adhesion in human endothelial cells.

scientific article published on 15 September 2012

RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.

scientific article

Random Survival Forest in practice: a method for modelling complex metabolomics data in time to event analysis

scientific article

Rearrangement of the Extracellular Domain/Extracellular Loop 1 Interface Is Critical for Thyrotropin Receptor Activation

scientific article published on 26 April 2016

Requirements and Perspectives for Integrating Metabolomics with other Omics Data

Reversible biological Birch reduction at an extremely low redox potential

scientific article published in July 2010

Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus "Candidatus Sulfobium".

scientific article published on 15 December 2017

Screening for inhibitors of tau polymerization

scientific article published in April 2005

Selenocysteine-independent suppression of UGA codons in the archaeon Methanococcus maripaludis

scientific article published on 24 July 2015

Serum Amino Acid Concentrations in Infants from Malawi are Associated with Linear Growth

scientific article published on 29 August 2019

Serum metabolites and risk of myocardial infarction and ischemic stroke: a targeted metabolomic approach in two German prospective cohorts

scientific article published on 27 November 2017

Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity.

scientific article

Sites of tau important for aggregation populate {beta}-structure and bind to microtubules and polyanions

scientific article published on 26 April 2005

Snake venomic of Crotalus durissus terrificus--correlation with pharmacological activities

scientific article published in May 2010

Snake venomics of the Siamese Russell's viper (Daboia russelli siamensis) -- relation to pharmacological activities

scientific article published on 20 January 2009

Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling

scientific article

Species determination of Culicoides biting midges via peptide profiling using matrix-assisted laser desorption ionization mass spectrometry

scientific article

Stable Isotope Probing Approaches to Study Anaerobic Hydrocarbon Degradation and Degraders

scientific article

Stable isotope labeling by amino acids in cell culture based proteomics reveals differences in protein abundances between spiral and coccoid forms of the gastric pathogen Helicobacter pylori

scientific article published on 12 May 2015

Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1.

scientific article published on June 2012

Structural analysis of the interleukin-8/glycosaminoglycan interactions by amide hydrogen/deuterium exchange mass spectrometry

scientific article published on 26 February 2015

Structural and functional insights into the interaction of sulfated glycosaminoglycans with tissue inhibitor of metalloproteinase-3 - A possible regulatory role on extracellular matrix homeostasis

scientific article published on 18 August 2016

Structural and microtubule binding properties of tau mutants of frontotemporal dementias

scientific article published on 13 February 2007

Structural characterization of beta-sheeted oligomers formed on the pathway of oxidative prion protein aggregation in vitro

scientific article published on 21 July 2006

Structural principles of tau and the paired helical filaments of Alzheimer's disease

scientific article published on January 2007

Structure, stability, and aggregation of paired helical filaments from tau protein and FTDP-17 mutants probed by tryptophan scanning mutagenesis

scientific article published on 26 August 2002

Styrene induces an inflammatory response in human lung epithelial cells via oxidative stress and NF-kappaB activation.

scientific article

Subpopulation-proteomics in prokaryotic populations

scientific article

Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440.

scientific article published on 29 August 2014

Subtoxic and toxic concentrations of benzene and toluene induce Nrf2-mediated antioxidative stress response and affect the central carbon metabolism in lung epithelial cells A549.

scientific article published on 16 October 2013

Sulfated hyaluronan attenuates inflammatory signaling pathways in macrophages involving induction of antioxidants

scientific article published on 24 March 2017

Sulfated hyaluronan containing collagen matrices enhance cell-matrix-interaction, endocytosis, and osteogenic differentiation of human mesenchymal stromal cells

scientific article published on 07 December 2012

Sulfated hyaluronic acid and dexamethasone possess a synergistic potential in the differentiation of osteoblasts from human bone marrow stromal cells

scientific article published on 28 November 2018

Sulfur and methane oxidation by a single microorganism

scientific article published in 2022

Sulfur-34S and 36S Stable Isotope Labeling of Amino Acids for Quantification (SULAQ34/36) of Proteome Analyses

scientific article published on 01 January 2018

Sulfur-34S stable isotope labeling of amino acids for quantification (SULAQ34) of proteomic changes in Pseudomonas fluorescens during naphthalene degradation

scientific article published on 19 April 2013

Sulfur-36S stable isotope labeling of amino acids for quantification (SULAQ)

scientific article published on 16 December 2011

Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice

scientific article published on 05 February 2019

Tau aggregation is driven by a transition from random coil to beta sheet structure

scientific article

The "jaws" of the tau-microtubule interaction.

scientific article published on 15 February 2007

The ABCG2 Efflux Transporter in the Mammary Gland Mediates Veterinary Drug Secretion across the Blood-Milk Barrier into Milk of Dairy Cows.

scientific article published on 08 March 2016

The Activation of Mucosal-Associated Invariant T (MAIT) Cells Is Affected by Microbial Diversity and Riboflavin Utilization in vitro

scientific article published on 22 April 2020

The EU chemicals strategy for sustainability: an opportunity to develop new approaches for hazard and risk assessment

scientific article published in 2022

The Effect of Wolffia globosa Mankai, a Green Aquatic Plant, on Postprandial Glycemic Response: A Randomized Crossover Controlled Trial

scientific article published on 10 May 2019

The LINA Study: Higher Sensitivity of Infant Compared to Maternal Eosinophil/Basophil Progenitors to Indoor Chemical Exposures

scientific article

The LINA cohort: Cord blood eosinophil/basophil progenitors predict respiratory outcomes in early infancy

scientific article published on 4 March 2014

The Simplified Human Intestinal Microbiota (SIHUMIx) Shows High Structural and Functional Resistance against Changing Transit Times in In Vitro Bioreactors

scientific article published on 03 December 2019

The acclimation of Phaeodactylum tricornutum to blue and red light does not influence the photosynthetic light reaction but strongly disturbs the carbon allocation pattern

scientific article

The aromatic volatile organic compounds toluene, benzene and styrene induce COX-2 and prostaglandins in human lung epithelial cells via oxidative stress and p38 MAPK activation.

scientific article published on 27 July 2011

The benzene metabolite 1,4-benzoquinone reduces regulatory T-cell function: A potential mechanism for tobacco smoke-associated atopic dermatitis

scientific article published on 5 March 2017

The class II benzoyl-coenzyme A reductase complex from the sulfate-reducing Desulfosarcina cetonica

scientific article published on 01 September 2019

The core of tau-paired helical filaments studied by scanning transmission electron microscopy and limited proteolysis

scientific article published in May 2006

The effect of green Mediterranean diet on cardiometabolic risk; a randomised controlled trial

scientific article published on 23 November 2020

The effect of the degree of sulfation of glycosaminoglycans on osteoclast function and signaling pathways

scientific article published on 4 September 2012

The glyphosate formulation Roundup® LB plus influences the global metabolome of pig gut microbiota in vitro

scientific article published on 17 July 2020

The gut bacterium <i>Extibacter muris</i> produces secondary bile acids and influences liver physiology in gnotobiotic mice

scientific article published on 01 January 2021

The lasting effect of limonene-induced particle formation on air quality in a genuine indoor environment.

scientific article published on 14 May 2015

The natively unfolded character of tau and its aggregation to Alzheimer-like paired helical filaments

scientific article published on 11 September 2008

The venomics of Bothrops alternatus is a pool of acidic proteins with predominant hemorrhagic and coagulopathic activities

scientific article published in May 2010

Thermal proteome profiling allows quantitative assessment of interactions between tetrachloroethene reductive dehalogenase and trichloroethene

scientific article published on 04 June 2018

Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments

scientific article published on 20 May 2011

Tracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities

scientific article published on 23 April 2020

Tracking active groundwater microbes with D2 O labelling to understand their ecosystem function

scientific article

Transcriptional signatures of regulatory and toxic responses to benzo-[a]-pyrene exposure

scientific article

Two-dimensional proteome reference map of Prototheca zopfii revealed reduced metabolism and enhanced signal transduction as adaptation to an infectious life style

scientific article published on September 2013

Validation of a multi-analyte HPLC-DAD method for determination of uric acid, creatinine, homovanillic acid, niacinamide, hippuric acid, indole-3-acetic acid and 2-methylhippuric acid in human urine

scientific article

Vitellogenin cleavage products as indicators for toxic stress in zebra fish embryos: a proteomic approach

scientific article published in December 2007

Volatile Organic Compounds Enhance Allergic Airway Inflammation in an Experimental Mouse Model ⬇️

scientific article published on July 3, 2012

Widespread soil bacterium that oxidizes atmospheric methane

scientific article published on 08 April 2019

securPharm e. V. - a protective shield against falsified medicines

scientific article published on 19 September 2017

Paulina is supported by:

About Paulina

Help