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List of works by Hideyuki Doi

15N/14N ratios of amino acids as a tool for studying terrestrial food webs: a case study of terrestrial insects (bees, wasps, and hornets)

scientific article published in 2011

A cross-system meta-analysis reveals coupled predation effects on prey biomass and diversity

article

A macroecological perspective for phenological research under climate change

scientific article published on 05 July 2017

A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes

scientific article published on 26 August 2015

A perspective on match/mismatch of phenology in community contexts

scientific article published in 2011

A shady phytoplankton paradox: when phytoplankton increases under low light

scientific article published on 04 July 2018

A unified framework for herbivore-to-producer biomass ratio reveals the relative influence of four ecological factors

scientific article published in 2021

Adaptive responses of animals to climate change are most likely insufficient

scientific article published on 23 July 2019

An analytical framework for estimating aquatic species density from environmental DNA.

scientific article published on 25 February 2018

An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols

scientific article published on 10 August 2020

Attached microalgae contribute to planktonic food webs in bays with fish and pearl oyster farms

scientific article published in 2008

Author Correction: Simultaneous absolute quantification and sequencing of fish environmental DNA in a mesocosm by quantitative sequencing technique

scientific article published in 2021

Biodiversity-ecosystem functioning relationships in long-term time series and palaeoecological records: deep sea as a test bed

scientific article

Biogeographic Patterns of Ectomycorrhizal Fungal Communities Associated With Castanopsis sieboldii Across the Japanese Archipelago

scientific article published on 14 November 2019

Bivalve tissue as a carbon and nitrogen isotope baseline indicator in coastal ecosystems

scientific article published in 2008

Broad-scale detection of environmental DNA for an invasive macrophyte and the relationship between DNA concentration and coverage in rivers

Carbon, nitrogen, and sulfur isotope changes and hydro-geological processes in a saline lake chain

article

Changes in carbon and nitrogen stable isotopes of chironomid larvae during growth, starvation and metamorphosis

scientific article published in January 2007

Changes in periphyton abundance and community structure with the dispersal of a caddisfly grazer, Micrasema quadriloba

Comparison of inhibition resistance among PCR reagents for detection and quantification of environmental DNA ⬇️

scholarly article

Compilation of real‐time <scp>PCR</scp> conditions toward the standardization of <scp>environmental DNA</scp> methods

scientific article published on 21 March 2021

Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms

scientific article published on 20 February 2020

Consequent effects of parasitism on population dynamics, food webs, and human health under climate change

scientific article

Conservation and research in extreme environments

scientific article published in 2009

Contribution of Chemoautotrophic Production to Freshwater Macroinvertebrates in a Headwater Stream Using Multiple Stable Isotopes

article

Contribution of organic matter sources to cyprinid fishes in the Chany Lake–Kargat River estuary, western Siberia

article

Correction to 'Starvation effects on nitrogen and carbon stable isotopes of animals: an insight from meta-analysis of fasting experiments'.

scientific article published on 15 November 2017

Delayed phenological timing of dragonfly emergence in Japan over five decades

scientific article published on August 2008

Detection of an endangered aquatic heteropteran using environmental DNA in a wetland ecosystem.

scientific article published on 19 July 2017

Development of a novel ELISA for detection of anti-A and anti-B antibodies in recipients of ABO-incompatible living donor liver grafts

scientific article published in April 2007

Differences between domesticated Eurasian and Japanese indigenous strains of the common carp (Cyprinus carpio) in cortisol release following acute stress

scholarly article by Teruhiko Takahara et al published 9 January 2014 in Ichthyological Research

Differences in nitrogen and carbon stable isotopes between planktonic and benthic microalgae

Different chemical cues originating from a shared predator induce common defense responses in two prey species

scientific article published on 14 October 2012

Dispersal, connectivity, and local conditions determine zooplankton community composition in artificially connected ponds

article

Distinct seasonal migration patterns of Japanese native and non-native genotypes of common carp estimated by environmental DNA. ⬇️

scientific article published on 12 September 2017

Distribution and drift dispersal dynamics of a caddisfly grazer in response to resource abundance and its ontogeny.

scientific article

Distribution patterns of stream grazers and relationships between grazers and periphyton at multiple spatial scales

Diurnal detection of environmental DNA of the semi-aquatic water shrew Chimarrogale platycephala using 25-h water sampling in streams

scientific article published in 2022

Drifting plankton from a reservoir subsidize downstream food webs and alter community structure

scientific article published in 2008

Drivers of population variability in phenological responses to climate change in Japanese birds

article

Droplet digital polymerase chain reaction (PCR) outperforms real-time PCR in the detection of environmental DNA from an invasive fish species

scientific article published on 20 April 2015

Ecological and evolutionary factors of intraspecific variation in inducible defenses: Insights gained from Daphnia experiments

scientific article published on 03 August 2020

Effects of biodiversity, habitat structure, and water quality on recreational use of rivers

scientific article published in 2013

Effects of daily temperature fluctuation on the survival of carp infected with Cyprinid herpesvirus 3

article

Effects of reach-scale canopy cover on trophic pathways of caddisfly larvae in a Japanese mountain stream

Effects of sample processing on the detection rate of environmental DNA from the Common Carp (Cyprinus carpio)

Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs

scientific article published on 06 May 2020

Effects of stream grazers with different functional traits on the spatial heterogeneity of periphyton mats.

scientific article published on 5 June 2019

Environmental <scp>DNA</scp> methods for detecting two invasive alien species (American bullfrog and red swamp crayfish) in Japanese ponds

scientific article published in 2022

Environmental DNA analysis as an emerging non-destructive method for plant biodiversity monitoring: a review

scientific article published in 2022

Environmental DNA analysis for estimating the abundance and biomass of stream fish

article

Environmental DNA detection and quantification of invasive red-eared sliders, Trachemy scripta elegans, in ponds and the influence of water quality ⬇️

scientific article published on 06 December 2019

Environmental DNA metabarcoding for biodiversity monitoring of a highly diverse tropical fish community in a coral reef lagoon: Estimation of species richness and detection of habitat segregation

scientific article published on 29 August 2020

Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods

scientific article published in PLoS ONE

Environmental DNA method for estimating salamander distribution in headwater streams, and a comparison of water sampling methods

scientific article

Estimating Isotope Fractionation Between Cercariae and Host Snail with the Use of Isotope Measurement Designed for Very Small Organisms

article

Estimation of biodiversity metrics by environmental DNA metabarcoding compared with visual and capture surveys of river fish communities

Estimation of fish biomass using environmental DNA

scientific article (publication date: 2012)

Evaluation of detection probabilities at the water-filtering and initial PCR steps in environmental DNA metabarcoding using a multispecies site occupancy model

scientific article published on 05 March 2019

Evaluation of the Environmental DNA Method for Estimating Distribution and Biomass of Submerged Aquatic Plants

scientific article

Exploring a legendary giant squid: an environmental DNA approach

scientific article published on 14 October 2020

Food sources of the pearl oyster in coastal ecosystems of Japan: Evidence from diet and stable isotope analysis

scientific article published in 2008

Genetic diversity increases regional variation in phenological dates in response to climate change

article

Global diversity of microbial communities in marine sediment

scientific article published on 19 October 2020

Global meta-analysis for controlling factors on carbon stable isotope ratios of lotic periphyton ⬇️

scientific article published on March 31, 2012

Global patterns of conservation research importance in different countries of the world

scientific article

Grazing on Microcystis (Cyanophyceae) by testate amoebae with special reference to cyanobacterial abundance and physiological state

Heterogeneous intra-annual climatic changes drive different phenological responses at two trophic levels

article

Host-parasite interactions and global climate oscillations

Idea paper: Community‐interaction analyses contribute to improving the performance of microbial fuel cells

scientific article published on 8 June 2020

Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding

scientific article published on 03 August 2021

Inducible defense behavior of an anuran tadpole: cue-detection range and cue types used against predator

article

Influence of a current style of culture on the quality of isolated pancreatic islets

scientific article published in March 2008

Integrating elements and energy through the metabolic dependencies of gross growth efficiency and the threshold elemental ratio

article by Hideyuki Doi et al published 20 April 2010 in Oikos

Isopropanol precipitation method for collecting fish environmental DNA

scholarly article by Hideyuki Doi et al published 19 January 2017 in Limnology and Oceanography: Methods

Isotopic evidence for the spatial heterogeneity of the planktonic food webs in the transition zone between river and lake ecosystems

scientific article published on 12 December 2013

Lack of congruence in species diversity indices and community structures of planktonic groups based on local environmental factors

scientific article

Latitudinal patterns in the phenological responses of leaf colouring and leaf fall to climate change in Japan

article

Longitudinal changes in zooplankton distribution below a reservoir outfall with reference to river planktivory

article by Kwang-Hyeon Chang et al published 22 April 2008 in Limnology

Macroalgae and seagrass contribution to gastropods in sub-tropical and temperate tidal flats

scholarly article in Journal of the Marine Biological Association of the United Kingdom, vol. 89 no. 2, October 2008

Nitrogen and carbon isotope fractionations of zooplankton consumers in ponds: potential effects of seston C�:�N stoichiometry

Nuclear internal transcribed spacer-1 as a sensitive genetic marker for environmental DNA studies in common carp Cyprinus carpio

scientific article published on 4 August 2016

Parasite-Induced Changes in Nitrogen Isotope Signatures of Host Tissues

Phenological timings of leaf budburst with climate change in Japan

scientific article (publication date: March 2008)

Photosynthetic property and primary production of phytoplankton in sublittoral sand bank area in the Seto Inland Sea, Japan

scholarly article by Motomi Genkai-Kato et al published 28 February 2008 in Ecological Research

Plant–animal interactions in the era of environmental <scp>DNA</scp> (<scp>eDNA</scp>)—A review

scientific article published on 21 May 2022

Predator‐induced plasticity in relation to prey body size: A meta‐analysis of <i>Daphnia</i> experiments

scientific article published in 2023

Radiocesium accumulation in the anuran frog, Rana tagoi tagoi, in forest ecosystems after the Fukushima Nuclear Power Plant accident.

scientific article published on 29 January 2015

Relationships between length and weight of freshwater macroinvertebrates in Japan

Resource availability and ecosystem size predict food-chain length in pond ecosystems

scientific article published in 2009

Resource productivity and availability impacts for food-chain length

scientific article published in 2012

Response of the Morus bombycis growing season to temperature and its latitudinal pattern in Japan

scientific article

Response of the plankton community to herbicide application (triazine herbicide, simetryn) in a eutrophicated system: short-term exposure experiment using microcosms

Scientific activity is a better predictor of nobel award chances than dietary habits and economic factors

scientific article (publication date: 2014)

Seasonal change in environmental DNA concentration of a submerged aquatic plant species

scientific article published on 10 July 2019

Seasonally tracking vertical and horizontal distribution of unionid mussels (Pronodularia japanensis): implications for agricultural drainage management

article

Sedimentary DNA tracks decadal-centennial changes in fish abundance

scientific article published on 08 October 2020

Selective assimilation by deposit feeders: Experimental evidence using stable isotope ratios

article

Shoreline bank construction modifies benthic–pelagic coupling of food webs

scientific article published in 2010

Shorter Food Chain Length in Ancient Lakes: Evidence from a Global Synthesis ⬇️

scientific article published on June 6, 2012

Simultaneous absolute quantification and sequencing of fish environmental DNA in a mesocosm by quantitative sequencing technique

scientific article published on 23 February 2021

Spatial changes in carbon and nitrogen stable isotopes of the plankton food web in a saline lake ecosystem

article

Spatial patterns of autochthonous and allochthonous resources in aquatic food webs

article

Spatial shifts in food sources for macrozoobenthos in an estuarine ecosystem: Carbon and nitrogen stable isotope analyses

scientific article published in 2005

Spatial structure of fungal DNA assemblages revealed with eDNA metabarcoding in a forest river network in western Japan

scientific article published in 2019

Special issue: Environmental DNA as a practical tool for aquatic conservation and restoration

scientific article published in 2022

Species traits and ecosystem characteristics affect species detection by <scp>eDNA</scp> metabarcoding in lake fish communities

scientific article published in 2023

Spring phenology delays in an insular subtropical songbird: is response to climate change constrained by population size?

article

Stable isotope characterization of fluids from the Lake Chany complex, western Siberia, Russian Federation

article

Stable isotopes indicate individual level trophic diversity in the freshwater gastropod Lymnaea stagnalis

article published in 2010

Starvation effects on nitrogen and carbon stable isotopes of animals: an insight from meta-analysis of fasting experiments.

scientific article published on 23 August 2017

Stream Macroinvertebrate Community Affected by Point-Source Metal Pollution

article by Hideyuki Doi et al published June 2007 in International Review of Hydrobiology

Stream grazers determine their crawling direction on the basis of chemical and particulate microalgal cues

scientific article

Superiority of fresh islets compared with cultured islets

scientific article published in January 2009

Suppression of environmental DNA degradation in water samples associated with different storage temperature and period using benzalkonium chloride

scientific article published on 13 July 2020

Swimming Behaviour of Chironomus acerbiphilus Larvae in Lake Katanuma

article

Taxonomic, functional, and phylogenetic diversity of fungi in a forest-tundra ecotone in Québec

scientific article published in 2021

Terrigenous subsidies in lakes support zooplankton production mainly via a green food chain and not the brown food chain

scientific article published in 2022

The "four-color issue" in ecology for considering ecosystem boundaries

article by Hideyuki Doi published 28 October 2013 in Web ecology

The detection of aquatic macroorganisms using environmental DNA analysis—A review of methods for collection, extraction, and detection

scholarly article

The discovery of species-abundance distribution in an ecological community

article

The use of algal-mat habitats by aquatic insect grazers: effects of microalgal cues

article by Hideyuki Doi et al published March 2006 in Basic and Applied Ecology

Trophic niche breadth of pond zooplankton species using stable isotope analysis and the relationship with the abiotic and biotic factors

scientific article published on 16 January 2019

Trophic niche breadth variability differs among three Neocalanus species in the subarctic Pacific Ocean

Trophic position and metabolic rate predict the long-term decay process of radioactive cesium in fish: a meta-analysis

scientific article

Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA.

scientific article

Use of droplet digital PCR for estimation of fish abundance and biomass in environmental DNA surveys

scientific article

Use of environmental DNA to survey the distribution of an invasive submerged plant in ponds

article

Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities.

scientific article published in November 2017

Using environmental DNA to estimate the distribution of an invasive fish species in ponds ⬇️

scientific article

Utility of environmental DNA analysis for effective monitoring of invasive fish species in reservoirs

scientific article

Water pre-filtration methods to improve environmental DNA detection by real-time PCR and metabarcoding

scientific article published on 07 May 2021

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