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List of works by Stacey J Winham

A Comprehensive Gene-Environment Interaction Analysis in Ovarian Cancer using Genome-wide Significant Common Variants

article

A Weighted Random Forests Approach to Improve Predictive Performance.

scientific article published on December 2013

A combination of the immunohistochemical markers CK7 and SATB2 is highly sensitive and specific for distinguishing primary ovarian mucinous tumors from colorectal and appendiceal metastases

scientific article published on 25 June 2019

A comparison of internal validation techniques for multifactor dimensionality reduction

scientific article

A comparison of multifactor dimensionality reduction and L1-penalized regression to identify gene-gene interactions in genetic association studies

scientific article published on 6 January 2011

A targeted genetic association study of epithelial ovarian cancer susceptibility

scientific article published on February 2016

Abstract PD07-10: Breast Cancer Patients Carrying the CYP2C8*3 Variant Are More Likely To Achieve Clinical Complete Response from Neoadjuvant Paclitaxel Treatment

Accumulating evidence for a role of TCF7L2 variants in bipolar disorder with elevated body mass index

scientific article

Adult body mass index and risk of ovarian cancer by subtype: a Mendelian randomization study

scientific article published on 10 July 2016

Adult height is associated with increased risk of ovarian cancer: a Mendelian randomisation study

scientific article published on 20 March 2018

Alterations in the Immune Cell Composition in Premalignant Breast Tissue that Precede Breast Cancer Development

scientific article published on 26 January 2017

An R package implementation of multifactor dimensionality reduction

scientific article

An integrative approach to assess X-chromosome inactivation using allele-specific expression with applications to epithelial ovarian cancer.

scientific article

Analyses of germline variants associated with ovarian cancer survival identify functional candidates at the 1q22 and 19p12 outcome loci

scientific article published on 15 June 2017

Applications of Multifactor Dimensionality Reduction to Genome-Wide Data Using the R Package ‘MDR’ ⬇️

scientific article published on January 1, 2013

Assessing the genetic architecture of epithelial ovarian cancer histological subtypes

scientific article

Association between mammographic breast density and histologic features of benign breast disease

scientific article published on 19 December 2017

Association of GATA4 sequence variation with alcohol dependence

scientific article

Association of p16 expression with prognosis varies across ovarian carcinoma histotypes: an Ovarian Tumor Tissue Analysis consortium study

scientific article published on 30 July 2018

Association of the PDYN gene with alcohol dependence and the propensity to drink in negative emotional states

scientific article published on 29 October 2012

Association of vitamin D levels and risk of ovarian cancer: a Mendelian randomization study

scientific article published on 4 September 2016

Associations of prodynorphin sequence variation with alcohol dependence and related traits are phenotype-specific and sex-dependent.

scientific article

Auriculotherapy for pain management: a systematic review and meta-analysis of randomized controlled trials

scientific article

Automated and Clinical Breast Imaging Reporting and Data System Density Measures Predict Risk for Screen-Detected and Interval Cancers: A Case-Control Study.

scientific article published in May 2018

Automated volumetric breast density measures: differential change between breasts in women with and without breast cancer

scientific article published on 28 October 2019

Beyond Bar and Line Graphs: Time for a New Data Presentation Paradigm

scientific article (publication date: April 2015)

Bioinformatics and DNA-extraction strategies to reliably detect genetic variants from FFPE breast tissue samples

scientific article published on 02 September 2019

Bipolar disorder with binge eating behavior: a genome-wide association study implicates PRR5-ARHGAP8.

scientific article published on 2 February 2018

Bipolar disorder with comorbid binge eating history: a genome-wide association study implicates APOB.

scientific article

Breast Cancer Risk and Progressive Histology in Serial Benign Biopsies

scientific article

Breast Cancer Risk and Use of Non-steroidal Anti-inflammatory Agents After a Benign Breast Biopsy

scientific article published on 27 July 2020

Breast cancer risk by the extent and type of atypical hyperplasia

scientific article published on 28 June 2016

CD56+ immune cell infiltration and MICA are decreased in breast lobules with fibrocystic changes.

scientific article published in November 2017

CYP19A1 fine-mapping and Mendelian randomization: estradiol is causal for endometrial cancer

scientific article

CYP2C8*3 predicts benefit/risk profile in breast cancer patients receiving neoadjuvant paclitaxel

scientific article published on 18 April 2012

Carboplatin/taxane-induced gastrointestinal toxicity: a pharmacogenomics study on the SCOTROC1 trial

scientific article published on 21 July 2015

Characterization of fusion genes in common and rare epithelial ovarian cancer histologic subtypes

scientific article published on April 2017

Chronic Recreational Physical Inactivity and Epithelial Ovarian Cancer Risk

article

Chronic Recreational Physical Inactivity and Epithelial Ovarian Cancer Risk: Evidence from the Ovarian Cancer Association Consortium

scientific article

Cigarette smoking is associated with adverse survival among women with ovarian cancer: Results from a pooled analysis of 19 studies

scientific article

Circulating CD14+ HLA-DRlo/- monocytic cells as a biomarker for epithelial ovarian cancer progression

scientific article published on 09 September 2020

Clinical and pathological associations of PTEN expression in ovarian cancer: a multicentre study from the Ovarian Tumour Tissue Analysis Consortium

scientific article published on 18 June 2020

Clinical features of bipolar spectrum with binge eating behaviour.

scientific article

Clinical phenotype and genetic risk factors for bipolar disorder with binge eating: an update

scientific article published on 15 July 2019

Clinical phenotype of bipolar disorder with comorbid binge eating disorder.

scientific article published on 3 June 2013

Clinicopathologic features of breast cancers that develop in women with previous benign breast disease.

scientific article published on 29 October 2015

Combined associations of a polygenic risk score and classical risk factors with breast cancer risk

scientific article published on 02 May 2020

Combined effect of volumetric breast density and body mass index on breast cancer risk

scientific article published on 25 May 2019

Comprehensive genetic assessment of the ESR1 locus identifies a risk region for endometrial cancer

scientific article published in October 2015

Correction: From Static to Interactive: Transforming Data Visualization to Improve Transparency

scientific article published on 17 August 2016

Correlations between sex-related hormones, alcohol dependence and alcohol craving

scientific article published on 27 February 2019

Cross-cancer genome-wide association study of endometrial cancer and epithelial ovarian cancer identifies genetic risk regions associated with risk of both cancers

scientific article published on 03 November 2020

Cumulative genetic risk predicts platinum/taxane-induced neurotoxicity

scientific article published on 20 August 2013

Cytotoxic T cell depletion with increasing epithelial abnormality in women with benign breast disease

scientific article published on 13 January 2020

Data visualization, bar naked: A free tool for creating interactive graphics.

scientific article published on 3 October 2017

Development and validation of the gene-expression Predictor of high-grade-serous Ovarian carcinoma molecular subTYPE (PrOTYPE)

scientific article published on 17 June 2020

Dose-Response Association of CD8+ Tumor-Infiltrating Lymphocytes and Survival Time in High-Grade Serous Ovarian Cancer.

scientific article published on 12 October 2017

Epigenome-wide ovarian cancer analysis identifies a methylation profile differentiating clear-cell histology with epigenetic silencing of the HERG K+ channel

scientific article published on 09 April 2013

Evaluation of 2 breast cancer risk models in a benign breast disease cohort

scientific article published on 22 June 2018

Evaluation of LIBRA Software for Fully Automated Mammographic Density Assessment in Breast Cancer Risk Prediction

scientific article published on 12 May 2020

Evening Chronotype, Disordered Eating Behavior, and Poor Dietary Habits in Bipolar Disorder

scientific article published on 26 April 2020

Evening chronotype as a discrete clinical subphenotype in bipolar disorder

scientific article published on 26 January 2020

Exome genotyping arrays to identify rare and low frequency variants associated with epithelial ovarian cancer risk

scientific article published on 4 July 2016

Extent of atypical hyperplasia stratifies breast cancer risk in 2 independent cohorts of women

scientific article published on 28 June 2016

Five endometrial cancer risk loci identified through genome-wide association analysis

scientific article published on 02 May 2016

From Static to Interactive: Transforming Data Visualization to Improve Transparency

scientific article

Gene signature model for breast cancer risk prediction for women with sclerosing adenosis.

scientific article published on 23 July 2015

Gene-environment interactions in genome-wide association studies: current approaches and new directions

scientific article (publication date: October 2013)

Genetic Risk Score Mendelian Randomization Shows that Obesity Measured as Body Mass Index, but not Waist:Hip Ratio, Is Causal for Endometrial Cancer

scientific article published on 22 August 2016

Genetic analyses of gynecological disease identify genetic relationships between uterine fibroids and endometrial cancer, and a novel endometrial cancer genetic risk region at the WNT4 1p36.12 locus

scientific article published on 15 July 2021

Genetic overlap between endometriosis and endometrial cancer: evidence from cross-disease genetic correlation and GWAS meta-analyses.

scientific article published on 2 April 2018

Genetics of cardiovascular disease: Importance of sex and ethnicity

scientific article published on 16 March 2015

Genome-wide Analysis Identifies Novel Loci Associated with Ovarian Cancer Outcomes: Findings from the Ovarian Cancer Association Consortium

scientific article

Genome-wide DNA methylomic differences between dorsolateral prefrontal and temporal pole cortices of bipolar disorder

scientific article published on 26 June 2019

Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2

scientific journal article

Genome-wide investigation of regional blood-based DNA methylation adjusted for complete blood counts implicates BNC2 in ovarian cancer

scientific article

Genomic Analysis Using Regularized Regression in High-Grade Serous Ovarian Cancer

scientific article published in February 2018

Grammatical evolution decision trees for detecting gene-gene interactions

scientific article published on 18 November 2010

Hyaline fibrous involution of breast lobules: a histologic finding associated with germline BRCA mutation

scientific article published on 17 April 2019

Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer

scientific article

Identification of a Locus Near <i>ULK1</i> Associated With Progression-Free Survival in Ovarian Cancer

publication published on 23 June 2021

Identification of nine new susceptibility loci for endometrial cancer

scientific article published in Nature Communications

Inherited variants affecting RNA editing may contribute to ovarian cancer susceptibility: results from a large-scale collaboration

scientific article published on July 2016

Investigation of Exomic Variants Associated with Overall Survival in Ovarian Cancer

scientific article

Joint association of mammographic density adjusted for age and body mass index and polygenic risk score with breast cancer risk

article

Longitudinal Changes in Volumetric Breast Density in Healthy Women across the Menopausal Transition

scientific article published on 11 June 2019

Longitudinal Changes in Volumetric Breast Density with Tamoxifen and Aromatase Inhibitors

scientific article

Macrophagic "crown-like structures" are associated with an increased risk of breast cancer in benign breast disease

scientific article published on 22 November 2017

Mammographic breast density and risk of breast cancer in women with atypical hyperplasia: an observational cohort study from the Mayo Clinic Benign Breast Disease (BBD) cohort

scientific article

Mediation analysis of alcohol consumption, DNA methylation, and epithelial ovarian cancer

scientific article published on 10 January 2018

Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.

scientific article

Methylation of Brain Derived Neurotrophic Factor (BDNF) Val66Met CpG site is associated with early onset bipolar disorder

scientific article published on 03 February 2020

Methylation of leukocyte DNA and ovarian cancer: relationships with disease status and outcome

scientific article

Model for Predicting Breast Cancer Risk in Women With Atypical Hyperplasia

scientific article published on 20 April 2018

Modeling X Chromosome Data Using Random Forests: Conquering Sex Bias

scientific article

Molecular signatures of X chromosome inactivation and associations with clinical outcomes in epithelial ovarian cancer

scientific article published on 01 April 2019

Mucocele-like lesions of the breast: a clinical outcome and histologic analysis of 102 cases

scientific article published on 31 October 2015

MyD88 and TLR4 Expression in Epithelial Ovarian Cancer

scientific article published in March 2018

NanoString-based breast cancer risk prediction for women with sclerosing adenosis

scientific article published on 10 August 2017

Natural history of age-related lobular involution and impact on breast cancer risk

scientific article published on 4 February 2016

PDYN rs2281285 variant association with drinking to avoid emotional or somatic discomfort

scientific article

Plasma Cell-Free DNA Methylomics of Bipolar Disorder With and Without Rapid Cycling

scientific article published on 30 November 2021

Population-based targeted sequencing of 54 candidate genes identifies PALB2 as a susceptibility gene for high-grade serous ovarian cancer

scientific article published on 16 June 2020

Postlactational involution biomarkers plasminogen and phospho-STAT3 are linked with active age-related lobular involution.

scientific article published on 27 July 2017

Potential pharmacogenomic targets in bipolar disorder: considerations for current testing and the development of decision support tools to individualize treatment selection

scientific article published on 04 July 2020

Prevalence and correlates of DSM-5 eating disorders in patients with bipolar disorder.

scientific article published on 19 November 2015

Prognostic gene expression signature for high-grade serous ovarian cancer

scientific article published on 27 May 2020

Radiomic Phenotypes of Mammographic Parenchymal Complexity: Toward Augmenting Breast Density in Breast Cancer Risk Assessment

scientific article published on 30 October 2018

Recreational physical inactivity and mortality in women with invasive epithelial ovarian cancer: evidence from the Ovarian Cancer Association Consortium

scientific article

Reinventing Biostatistics Education for Basic Scientists

scientific article

Reveal, Don't Conceal: Transforming Data Visualization to Improve Transparency

scientific article published on 28 October 2019

SNP interaction detection with Random Forests in high-dimensional genetic data

scientific article

Sex differences in the risk of rapid cycling and other indicators of adverse illness course in patients with bipolar I and II disorder

scientific article published on September 2015

Sex hormones in alcohol consumption: a systematic review of evidence.

scientific article

Sex-specific effects of gain-of-function P2RX7 variation on bipolar disorder

scientific article published on 03 November 2018

Shared genetics underlying epidemiological association between endometriosis and ovarian cancer

scientific article published on 30 July 2015

Simplified breast risk tool integrating questionnaire risk factors, mammographic density, and polygenic risk score: development and validation

scientific article published on 04 December 2020

Somatic mutations in benign breast disease tissues and association with breast cancer risk

scientific article published in 2021

Statistical methods for testing X chromosome variant associations: application to sex-specific characteristics of bipolar disorder

scientific article published on 09 December 2019

Testing and estimation of X‐chromosome SNP effects: Impact of model assumptions

scientific article published in 2021

The association between socioeconomic status and tumour stage at diagnosis of ovarian cancer: A pooled analysis of 18 case-control studies

scientific article published on 3 February 2016

The effect of retrospective sampling on estimates of prediction error for multifactor dimensionality reduction

scientific article

The impact of binge eating behavior on lithium- and quetiapine-associated changes in body weight, body mass index, and waist circumference during 6 months of treatment: Findings from the bipolar CHOICE study

scientific article published on 12 September 2018

The inflammatory microenvironment in epithelial ovarian cancer: a role for TLR4 and MyD88 and related proteins

scientific article published on 26 July 2016

Transcriptomic Characterization of Endometrioid, Clear Cell, and High-Grade Serous Epithelial Ovarian Carcinoma

scientific article published on 02 July 2018

Transparent reporting for reproducible science

scientific article published on 05 July 2016

Variants in genes encoding small GTPases and association with epithelial ovarian cancer susceptibility

scientific article published in PLoS ONE

Why we need to report more than 'Data were Analyzed by t-tests or ANOVA'

scientific article published on 21 December 2018

fiddle: a tool to combat publication bias by getting research out of the file drawer and into the scientific community

scientific article published on 01 October 2020

p53 and ovarian carcinoma survival: an Ovarian Tumor Tissue Analysis consortium study

scientific article published on 22 March 2023

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