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List of works by Martin Golebiewski

A brief history of COMBINE

Bringing Communities Together: Mapping the Investigation-Study-Assay-Model (ISA) to Fast Healthcare Interoperability Resources (FHIR)

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

scientific article

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms ⬇️

journal article from 'Molecular Systems Biology' published in 2021

Challenges for an enzymatic reaction kinetics database

scientific article published on 25 October 2013

Controlled vocabularies and semantics in systems biology

scientific article (publication date: 25 October 2011)

Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices

scientific article published on 01 January 2019

Data extraction for the reaction kinetics database SABIO-RK

Enzyme kinetics informatics: from instrument to browser

scientific article

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research

scientific article

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Harmonizing semantic annotations for computational models in biology

Harmonizing semantic annotations for computational models in biology

scientific article published on 01 March 2019

Integration of SABIO-RK in workbenches for kinetic model design

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

scientific article published on 9 August 2018

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

article by Dagmar Waltemath et al published 15 March 2014 in Standards in genomic sciences

Normalization and Matching of Chemical Compound Names

Path2Models: large-scale generation of computational models from biochemical pathway maps

scientific article

Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative

scientific article (publication date: 2015)

SABIO-RK--database for biochemical reaction kinetics

scientific article

SABIO-RK: Integration and Curation of Reaction Kinetics Data

SABIO-RK: a database for biochemical reactions and their kinetics

SBML2L(A)T(E)X: conversion of SBML files into human-readable reports

scientific article

SEEK: a systems biology data and model management platform

scientific article

Specifications of Standards in Systems and Synthetic Biology

scientific article published on 04 September 2015

Specifications of Standards in Systems and Synthetic Biology

scientific article published in June 2015

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.

scientific article published on 18 December 2016

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.

scientific article published in September 2016

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.

scientific article published on 29 March 2018

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

scientific article published on 13 July 2019

Specifications of standards in systems and synthetic biology: status and developments in 2020

scientific article published on 29 June 2020

Specifications of standards in systems and synthetic biology: status and developments in 2021

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022

scientific article published in March 2023

Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024

Systems Biology in ELIXIR: modelling in the spotlight

scientific article published on 31 May 2024

The AIMe registry for artificial intelligence in biomedical research

scientific article published on 25 August 2021

The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable.

scientific article published on April 2016

The evolution of standards and data management practices in systems biology

scientific article

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)

scientific article published on 29 June 2020

The histone deacetylase inhibitor valproic acid selectively induces proteasomal degradation of HDAC2

scientific article

Towards standardization guidelines for in silico approaches in personalized medicine

scientific article published on 24 July 2020

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