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List of works by Shimon Weiss

48-spot single-molecule FRET setup with periodic acceptor excitation

48-spot single-molecule FRET setup with periodic acceptor excitation

scientific article published on 26 June 2017

8-spot smFRET analysis using two 8-pixel SPAD arrays

scientific article

A 512 × 512 SPAD Image Sensor With Integrated Gating for Widefield FLIM

scientific article published in January 2019

A Bis(phosphine)-Modified Peptide Ligand for Stable and Luminescent Quantum Dots in Aqueous Media

scientific article published on September 2013

A Novel Initiation Pathway in Escherichia Coli Transcription

scientific article published on 4 March 2016

A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Förster-Type Resonance Energy Transfer (PIFE-FRET).

scientific article

A rugged energy landscape mechanism for trapping of transmembrane receptors during endocytosis

scientific article published on March 2003

A space- and time-resolved single photon counting detector for fluorescence microscopy and spectroscopy

scientific article published in February 2006

Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation

scientific article

Achieving increased resolution and more pixels with Superresolution Optical Fluctuation Imaging (SOFI).

scientific article

Adsorbate-induced absorption redshift in an organic-inorganic cluster conjugate: Electronic effects of surfactants and organic adsorbates on the lowest excited states of a methanethiol-CdSe conjugate

scientific article published on November 2009

Advances in fluorescence imaging with quantum dot bio-probes.

scientific article

Advances in superresolution optical fluctuation imaging (SOFI).

scientific article published on 14 May 2013

Aligning the μs-ALEX Setup

scientific article published on 2 November 2015

Alternating Laser Excitation for Solution-Based Single-Molecule FRET.

scientific article published on 2 November 2015

Alternating-Laser Excitation of Single Molecules

scientific article published in October 2005

Alternating-laser excitation of single molecules

scientific article

Analytical chemistry. How to detect weak pairs

scientific article published in January 2003

Aromatic aldehyde and hydrazine activated peptide coated quantum dots for easy bioconjugation and live cell imaging

scientific article

Assembling the μs-ALEX Setup

scientific article published on 2 November 2015

Bioactivation and cell targeting of semiconductor CdSe/ZnS nanocrystals with phytochelatin-related peptides

scientific article

Characterization of Porous Materials by Fluorescence Correlation Spectroscopy Super-resolution Optical Fluctuation Imaging

scientific article (publication date: 22 September 2015)

Characterizing highly dynamic conformational states: The transcription bubble in RNAP-promoter open complex as an example

scientific article published in March 2018

Characterizing highly dynamic conformational states: the transcription bubble in RNAP-promoter open complex as an example

scientific article published on 13 September 2017

Characterizing the Quantum-Confined Stark Effect in Semiconductor Quantum Dots and Nanorods for Single-Molecule Electrophysiology

scientific article published on 15 October 2018

Cobalt(III) Protoporphyrin Activates the DGCR8 Protein and Can Compensate microRNA Processing Deficiency

scientific article published on June 2015

Collective effects in excitonic free induction decay: Do semiconductors and atoms emit coherent light in different ways?

scientific article published on 2 November 1992

Combining atomic force and fluorescence microscopy for analysis of quantum-dot labeled protein-DNA complexes

scientific article published on September 2009

Comparison of photophysical and colloidal properties of biocompatible semiconductor nanocrystals using fluorescence correlation spectroscopy.

scientific article published in April 2005

Cusp-artifacts in high order superresolution optical fluctuation imaging

scientific article published on 02 January 2020

Cys-diabody quantum dot conjugates (immunoQdots) for cancer marker detection

scientific article

Detail-preserving Fluorescence Microscopy Image Deconvolution

scientific article published in 2016

Development of an ultrafast single photon counting imager for single molecule imaging.

scientific article published in February 2006

Development of new photon-counting detectors for single-molecule fluorescence microscopy

scientific article

Different types of pausing modes during transcription initiation.

scientific article

Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.

scientific article

Dynamic partitioning of a glycosyl-phosphatidylinositol-anchored protein in glycosphingolipid-rich microdomains imaged by single-quantum dot tracking

scientific article

Efficient site-specific labeling of proteins via cysteines

scientific article

Enhanced Absorption Induced by a Metallic Nanoshell

scientific article published in January 2004

Enhancing the photoluminescence of peptide-coated nanocrystals

scientific article published on 28 April 2005

Enhancing the photoluminescence of peptide-coated nanocrystals with shell composition and UV irradiation

scientific article

Enzymatically incorporated genomic tags for optical mapping of DNA-binding proteins

scientific article

FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET

Femtomole mixer for microsecond kinetic studies of protein folding

scientific article

Fluorescence lifetime microscopy with a time- and space-resolved single-photon counting detector.

scientific article published on 25 October 2006

Fluorescence resonance energy transfer and protein-induced fluorescence enhancement as synergetic multi-scale molecular rulers

scientific article published on 8 April 2016

Fluorescence spectroscopy of single biomolecules.

scientific article

Fluorescence spectroscopy of single-molecule dynamics and its biological applications

scientific article published on 24 April 1998

Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules

scientific article published on 2 June 2004

Fluorescent probes and bioconjugation chemistries for single-molecule fluorescence analysis of biomolecules

scientific article published on 22 December 2002

Four-color alternating-laser excitation single-molecule fluorescence spectroscopy for next-generation biodetection assays

scientific article (publication date: 19 January 2012)

High Speed Multichannel Charge Sensitive Data Acquisition System with Self-Triggered Event Timing.

scientific article

High affinity scFv-hapten pair as a tool for quantum dot labeling and tracking of single proteins in live cells

scientific article

High-throughput FCS using an LCOS spatial light modulator and an 8 × 1 SPAD array

scientific article

High-throughput multispot single-molecule spectroscopy

scientific article

High-throughput single-molecule optofluidic analysis

scientific article

Hybrid approach to the synthesis of highly luminescent CdTe/ZnS and CdHgTe/ZnS nanocrystals

scientific article published in February 2004

Hybrid photodetector for single-molecule spectroscopy and microscopy

scientific article

Improved Surface Functionalization and Characterization of Membrane-Targeted Semiconductor Voltage Nanosensors

scientific article published on 01 July 2019

In vivo assembly and single-molecule characterization of the transcription machinery from Shewanella oneidensis MR-1.

scientific article published on 10 December 2008

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

scientific article

Instantaneous frequency dynamics of coherent wave mixing in semiconductor quantum wells

scientific article published on 24 May 1993

Interfacing the Cell with "Biomimetic Membrane Proteins"

scientific article published on 25 November 2019

Labeling Cytosolic Targets in Live Cells with Blinking Probes

scientific article published on July 2013

Lighting up individual DNA binding proteins with quantum dots

scientific article published on April 2009

Mapping Transcription Factors on Extended DNA: A Single Molecule Approach

scientific article published on 28 November 2009

Measuring diffusion with polarization-modulation dual-focus fluorescence correlation spectroscopy

scientific article

Membrane insertion of- and membrane potential sensing by semiconductor voltage nanosensors: feasibility demonstration

scientific article published on 16 March 2016

Membrane insertion of-and membrane potential sensing by-semiconductor voltage nanosensors: Feasibility demonstration.

scientific article

Membrane specific mapping and colocalization of malarial and host skeletal proteins in the Plasmodium falciparum infected erythrocyte by dual-color near-field scanning optical microscopy

scientific article

Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET

Monte-Carlo Diffusion-Enhanced Photon Inference: Distance Distributions And Conformational Dynamics In single-Molecule FRET

scientific article published on 5 August 2018

Multi-parameter photon-by-photon hidden Markov modeling

scientific article published on 22 February 2022

Multispot single-molecule FRET: High-throughput analysis of freely diffusing molecules

scientific article

Multispot single-molecule FRET: high-throughput analysis of freely diffusing molecules

scientific article published on 2 November 2016

Nanoblade delivery and incorporation of quantum dot conjugates into tubulin networks in live cells

scientific article published on 5 November 2012

Nanometer distance measurements between multicolor quantum dots

scientific article published on May 2009

Near-field fluorescence microscopy of cells

scientific article published in March 1998

Near-infrared peptide-coated quantum dots for small animal imaging

scientific article published in January 2006

New photon-counting detectors for single-molecule fluorescence spectroscopy and imaging

scientific article

Nonequilibrium single molecule protein folding in a coaxial mixer

scientific article (publication date: July 2008)

Opening and closing of the bacterial RNA polymerase clamp

scientific article

Optical control and study of biological processes at the single-cell level in a live organism

scientific article published on 14 June 2013

Optical crosstalk in SPAD arrays for high-throughput single-molecule fluorescence spectroscopy

scientific article published on 21 October 2017

Optical properties of quantum-dot-doped liquid scintillators.

scientific article published on October 2013

Particle size, surface coating, and PEGylation influence the biodistribution of quantum dots in living mice

scientific article published on January 2009

Peptide coated quantum dots for biological applications

scientific article

Peptide-coated semiconductor nanocrystals for biomedical applications

scientific article published in January 2005

Period doubling and quasi-periodicity in additive-pulse mode-locked lasers.

scientific article

Periodic acceptor excitation spectroscopy of single molecules.

scientific article

Phasor imaging with a widefield photon-counting detector

scientific article

Photobleaching pathways in single-molecule FRET experiments

scientific article

Photon-Counting H33D Detector for Biological Fluorescence Imaging.

scientific article

Photon-HDF5: An Open File Format for Timestamp-Based Single-Molecule Fluorescence Data

scientific article published in February 2016

Photon-HDF5: An Open File Format for Timestamp-Based Single-Molecule Fluorescence Experiments

scientific article published on 5 January 2016

Photon-HDF5: Open Data Format and Computational Tools for Timestamp-based Single-Molecule Experiments

scientific article

Photon-HDF5: an open file format for single-molecule fluorescence experiments using photon-counting detectors

scientific article published on 9 September 2015

Probing structural heterogeneities and fluctuations of nucleic acids and denatured proteins

scientific article published on 15 November 2005

Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor.

scientific article

Processing of microRNA primary transcripts requires heme in mammalian cells

scientific article

Protein Dynamics and Interactions

article

Protein-protein interactions as a tool for site-specific labeling of proteins

scientific article published on 29 June 2005

PySOFI: an open source Python package for SOFI

scientific article published in 2022

Quantum dots for in vivo small-animal imaging

scientific article

Quantum dots for live cells, in vivo imaging, and diagnostics

scientific article

Ratiometric single-molecule studies of freely diffusing biomolecules.

scientific article

Ratiometric widefield imaging with spectrally balanced detection

scientific article published on 30 September 2019

Resolving the spatial relationship between intracellular components by dual color super resolution optical fluctuations imaging (SOFI)

scientific article

Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis

scientific article

Rotational and translational diffusion of peptide-coated CdSe/CdS/ZnS nanorods studied by fluorescence correlation spectroscopy.

scientific article published on February 2006

Ruggedness in the folding landscape of protein L.

scientific article

SOFI-based 3D superresolution sectioning with a widefield microscope

scientific article

Sample Preparation and Data Acquisition for μs-ALEX.

scientific article

Semiconductor nanocrystals as fluorescent biological labels

scientific article

Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments

scientific article

Silicon photon-counting avalanche diodes for single-molecule fluorescence spectroscopy

scientific article

Single molecule protein folding kinetics in a co-axial microfluidic mixer

scientific article published on 7 February 2008

Single molecule quantum-confined Stark effect measurements of semiconductor nanoparticles at room temperature

scientific article

Single molecule quantum-confined Stark effect measurements of semiconductor nanoparticles at room temperature

scientific article published on 22 February 2013

Single-molecule FRET experiments with a red-enhanced custom technology SPAD.

scientific article

Single-molecule FRET reveals sugar-induced conformational dynamics in LacY.

scholarly article

Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism.

scientific article

Single-molecule fluorescence studies of protein folding and conformational dynamics

scientific article

Single-molecule spectroscopy and microscopy

scientific article published in January 2002

Single-quantum dot imaging with a photon counting camera

scientific article

Singlet oxygen production by Peptide-coated quantum dot-photosensitizer conjugates

scientific article published on 4 May 2007

Site-specific labeling of proteins for single-molecule FRET by combining chemical and enzymatic modification

scientific article published in February 2006

Slow unfolded-state structuring in Acyl-CoA binding protein folding revealed by simulation and experiment

scientific article (publication date: August 2012)

Solubilization of quantum dots with a recombinant peptide from Escherichia coli

scientific article published on May 2007

Sparsity-based super-resolution optical fluctuation imaging

scientific article published in 2016

Spatiotemporal manipulation of retinoic acid activity in zebrafish hindbrain development via photo-isomerization

scientific article published on 8 August 2012

Stable, compact, bright biofunctional quantum dots with improved peptide coating

scientific article published on 30 August 2012

Super-resolution Imaging of Plasmonic Near-Fields: Overcoming Emitter Mislocalizations

publication published on 16 May 2022

Superresolution optical fluctuation imaging with organic dyes

scientific article

Suppression of quantum dot blinking in DTT-doped polymer films

scientific article published on March 2009

Synthesis and Properties of Biocompatible Water-Soluble Silica-Coated CdSe/ZnS Semiconductor Quantum Dots†

article published in 2001

The power and prospects of fluorescence microscopies and spectroscopies.

scientific article

The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection

scientific article published on 28 December 2012

Three-color alternating-laser excitation of single molecules: monitoring multiple interactions and distances

scientific article

Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer.

scientific article

Toward single-molecule optical mapping of the epigenome

scientific article

Tracking bio-molecules in live cells using quantum dots

scientific article published on September 2008

Tracking single proteins in live cells using single-chain antibody fragment-fluorescent quantum dot affinity pair

scientific article

Ultra high-throughput single molecule spectroscopy with a 1024 pixel SPAD.

scientific article published on February 2011

Ultrafast phase dynamics of coherent emission from excitons in GaAs quantum wells

scientific article published on 15 September 1994

Ultrahigh-resolution multicolor colocalization of single fluorescent nanocrystals

scientific article published in January 2001

Using photon statistics to boost microscopy resolution

scholarly article

Wavefunction engineering: From quantum wells to near-infrared type-II colloidal quantum dots synthesized by layer-by-layer colloidal epitaxy

scientific article

Wide-field time-gated SPAD imager for phasor-based FLIM applications

scientific article published on 05 February 2020

microPET-based biodistribution of quantum dots in living mice

scientific article published on 17 August 2007

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