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List of works by Alan Christoffels

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Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

scientific article
The genome of woodland strawberry (Fragaria vesca)

scientific article
The African coelacanth genome provides insights into tetrapod evolution

scientific article
Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

scientific article published on 10 March 2004
Research capacity. Enabling the genomic revolution in Africa

scientific article published in June 2014
eVOC: a controlled vocabulary for unifying gene expression data

scientific article
A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base.

scientific article
Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes

scientific article published on 14 June 2004
Mice and men: their promoter properties

scientific article published on 28 April 2006
Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain

scientific article
Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

scientific article
DAMPD: a manually curated antimicrobial peptide database

scientific article published on 21 November 2011
HCVpro: hepatitis C virus protein interaction database

scientific article published on 09 September 2011
Evidence for a common biological pathway linking three Parkinson's disease-causing genes: parkin, PINK1 and DJ-1

scientific article
Database for exploration of functional context of genes implicated in ovarian cancer

scientific article published on 12 September 2008
Gonad differentiation in zebrafish is regulated by the canonical Wnt signaling pathway.

scientific article published on 27 February 2014
Hox gene clusters in the Indonesian coelacanth, Latimeria menadoensis

scientific article
DDPC: Dragon Database of Genes associated with Prostate Cancer

scientific article
Odorant and gustatory receptors in the tsetse fly Glossina morsitans morsitans

scientific article (publication date: April 2014)
Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome

scientific article published on 18 December 2006
Towards inferring the global movement of beak and feather disease virus

scientific article
Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools

scientific article published on January 2004
Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans.

scientific article published on 12 December 2017
A glance at quality score: implication for de novo transcriptome reconstruction of Illumina reads.

scientific article published on 12 February 2014
DDEC: Dragon database of genes implicated in esophageal cancer

scientific article
Expansion mechanisms and functional annotations of hypothetical genes in the rice genome

scientific article published on 17 June 2009
Challenges of biobanking in South Africa to facilitate indigenous research in an environment burdened with human immunodeficiency virus, tuberculosis, and emerging noncommunicable diseases

scientific article
Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage map

scientific article
DDESC: Dragon database for exploration of sodium channels in human

scientific article
Taste and odorant receptors of the coelacanth--a gene repertoire in transition

scientific article
A comparative analysis of trypanosomatid SNARE proteins.

scientific article
DESTAF: a database of text-mined associations for reproductive toxins potentially affecting human fertility

scientific article
Genome-Wide Comparative Analysis of Chemosensory Gene Families in Five Tsetse Fly Species

scientific article
Dragon exploratory system on hepatitis C virus (DESHCV).

scientific article published on 29 December 2010
Evolutionary genomics of Glossina morsitans immune-related CLIP domain serine proteases and serine protease inhibitors

scientific article published on 3 November 2010
Human African trypanosomiasis research gets a boost: unraveling the tsetse genome.

scientific article published on 24 April 2014
Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms

scientific article
An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench).

scientific article published on 22 December 2017
Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

scientific article published on 9 December 2016
Identification and characterization of microRNAs expressed in the African malaria vector Anopheles funestus life stages using high throughput sequencing

scientific article
International glossina genome initiative 2004-2014: a driver for post-genomic era research on the African continent

scientific article
Molecular modelling and simulation studies of the Mycobacterium tuberculosis multidrug efflux pump protein Rv1258c

scientific article published in PLoS ONE
Assessment of the parallelization approach of d2_cluster for high-performance sequence clustering

scientific article published in May 2002
Resistance related metabolic pathways for drug target identification in Mycobacterium tuberculosis

scientific article published on 8 February 2016
The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt

scientific article published on 4 February 2016
Correction: Genome-Wide Comparative Analysis of Chemosensory Gene Families in Five Tsetse Fly Species

scientific article published on 5 December 2016
Tetraodon genome analysis provides further evidence for whole-genome duplication in the ray-finned fish lineage

article
TSS seq based core promoter architecture in blood feeding Tsetse fly (Glossina morsitans morsitans) vector of Trypanosomiasis

scientific article published on 22 September 2015
Chemosensory receptors in tsetse flies provide link between chemical and behavioural ecology

scientific article
Baobab Laboratory Information Management System: Development of an Open-Source Laboratory Information Management System for Biobanking

scientific article

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