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List of works by Tomáš Kalina

A high-throughput pipeline for validation of antibodies

scholarly article by Krzysztof Sikorski published in October 2018

Aberrantly expressed CEACAM6 is involved in the signaling leading to apoptosis of acute lymphoblastic leukemia cells.

scientific article published on 7 April 2010

Acute lymphoblastic leukemia incidence during socioeconomic transition: selective increase in children from 1 to 4 years

scientific article published on 01 April 2002

Age-associated distribution of normal B-cell and plasma cell subsets in peripheral blood.

scientific article published on 2 March 2018

Alteration of B cell subsets and the receptor for B cell activating factor (BAFF) in paediatric patients with type 1 diabetes.

scientific article published on 13 April 2017

An automated analysis of highly complex flow cytometry-based proteomic data.

scientific article

Analyses of large flow cytometry datasets.

scientific article published on 31 December 2013

Appearance of cytomegalovirus-specific T-cells predicts fast resolution of viremia post hematopoietic stem cell transplantation

scientific article published on 8 December 2015

Automated database-guided expert-supervised orientation for immunophenotypic diagnosis and classification of acute leukemia

scientific article published in November 2017

Backtracking of ALL to cord blood.

scientific article published on 8 February 2009

CD Maps-Dynamic Profiling of CD1-CD100 Surface Expression on Human Leukocyte and Lymphocyte Subsets

scientific article published on 23 October 2019

CD2-positive B-cell precursor acute lymphoblastic leukemia with an early switch to the monocytic lineage.

scientific article published on 25 November 2013

CD27 expression in malignant and normal human B precursors: a confirmed phenomenon. Reply to Nilsson and colleagues

scientific article published in May 2006

CVID-Associated Tumors: Czech Nationwide Study Focused on Epidemiology, Immunology, and Genetic Background in a Cohort of Patients With CVID

scientific article published on 01 January 2018

Characterization of lymphocyte subsets in patients with common variable immunodeficiency reveals subsets of naive human B cells marked by CD24 expression.

scientific article published in November 2010

Characterization of the B-cell compartment in a patient with Schnitzler syndrome

scientific article published on 28 September 2010

Comments on EuroFlow standard operating procedures for instrument setup and compensation for BD FACS Canto II, Navios and BD FACS Lyric instruments

scientific article published on 23 October 2019

Common Variable Immunodeficiency patients with a phenotypic profile of immunosenescence present with thrombocytopenia.

scientific article

Correlation of CD33 with poorer prognosis in childhood ALL implicates a potential of anti-CD33 frontline therapy.

scientific article published in June 2005

Cytokines, growth, and environment factors in bone marrow plasma of acute lymphoblastic leukemia pediatric patients

scientific article published in March 2014

Danon disease: a focus on processing of the novel LAMP2 mutation and comments on the beneficial use of peripheral white blood cells in the diagnosis of LAMP2 deficiency.

scientific article published on 21 February 2012

De novo generation of CD4 T cells against viruses present in the host during immune reconstitution

scientific article published on 15 March 2005

Defects in memory B-cell and plasma cell subsets expressing different immunoglobulin-subclasses in patients with CVID and immunoglobulin subclass deficiencies

scientific article published on 28 February 2019

Detailed immunophenotyping of B-cell precursors in regenerating bone marrow of acute lymphoblastic leukaemia patients: implications for minimal residual disease detection

scientific article published on 17 April 2017

Detection of fusion genes at the protein level in leukemia patients via the flow cytometric immunobead assay ⬇️

scientific article published on November 3, 2010

EVI2B is a C/EBPα target gene required for granulocytic differentiation and functionality of hematopoietic progenitors.

scientific article

EuroFlow antibody panels for standardized n-dimensional flow cytometric immunophenotyping of normal, reactive and malignant leukocytes

scientific article

EuroFlow standardization of flow cytometer instrument settings and immunophenotyping protocols ⬇️

scientific article published on September 1, 2012

EuroFlow-Based Flowcytometric Diagnostic Screening and Classification of Primary Immunodeficiencies of the Lymphoid System

scientific article published on 13 June 2019

Expert-independent classification of mature B-cell neoplasms using standardized flow cytometry: a multicentric study

scientific article published in 2022

Flow cytometric immunobead assay for fast and easy detection of PML-RARA fusion proteins for the diagnosis of acute promyelocytic leukemia

scientific article

Flow cytometric immunobead assay for the detection of BCR-ABL fusion proteins in leukemia patients.

scientific article

Flow diagnostics essential code: a simple and brief format for the summary of leukemia phenotyping

scientific article published in July 2014

Fluorochrome choices for multi-color flow cytometry

scientific article published on 07 June 2019

Genetic defects in PI3Kδ affect B-cell differentiation and maturation leading to hypogammaglobulineamia and recurrent infections.

scientific article published on 16 January 2017

Guidelines for the use of flow cytometry and cell sorting in immunological studies

scientific article published on October 2017

Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)

scientific article published on 01 October 2019

Heterologous Cytomegalovirus and Allo-Reactivity by Shared T Cell Receptor Repertoire in Kidney Transplantation

scientific article published on 31 October 2019

High-resolution Antibody Array Analysis of Childhood Acute Leukemia Cells

scientific article published on 19 January 2016

Human interleukin-23 receptor antagonists derived from an albumin-binding domain scaffold inhibit IL-23-dependent ex vivo expansion of IL-17-producing T-cells

scientific article

Implementation of Mass Cytometry for Immunoprofiling of Patients with Solid Tumors

scientific article published on 11 February 2019

Interlaboratory variability of CD34+ stem cell enumeration. A pilot study to national external quality assessment within the Czech Republic.

scientific article published in December 2010

Kinetics of dendritic cells reconstitution and costimulatory molecules expression after myeloablative allogeneic haematopoetic stem cell transplantation: Implications for the development of acute graft-versus host disease

scientific article published in April 2009

LAMP2 exon-copy number variations in Danon disease heterozygote female probands: Infrequent or underdetected?

scientific article published on 08 September 2018

LAMP2 flow cytometry in peripheral white blood cells is an established method that facilitates identification of heterozygous Danon disease female patients and mosaic mutation carriers.

scientific article published on 27 January 2015

Loss of B cells and their precursors is the most constant feature of GATA-2 deficiency in childhood myelodysplastic syndrome.

scientific article published on 24 March 2016

Low marginal zone-like B lymphocytes and natural antibodies characterize skewed B-lymphocyte subpopulations in del22q11 DiGeorge patients

scientific article published on 2 September 2015

Lymphocyte enrichment using CD81-targeted immunoaffinity matrix.

scientific article published on 4 August 2016

Lymphoproliferation, immunodeficiency and early-onset inflammatory bowel disease associated with a novel mutation in Caspase 8

scientific article published on 18 October 2018

MetaMass, a tool for meta-analysis of subcellular proteomics data.

scientific article

Mosaic tissue distribution of the tandem duplication of LAMP2 exons 4 and 5 demonstrates the limits of Danon disease cellular and molecular diagnostics.

scientific article published on 29 May 2013

Myeloid antigens in childhood lymphoblastic leukemia: clinical data point to regulation of CD66c distinct from other myeloid antigens

scientific article

Novel SAMD9 Mutation in a Patient With Immunodeficiency, Neutropenia, Impaired Anti-CMV Response, and Severe Gastrointestinal Involvement

scientific article published on 18 September 2019

Pigmentary retinopathy can indicate the presence of pathogenic LAMP2 variants even in somatic mosaic carriers with no additional signs of Danon disease

scientific article published on 13 June 2020

Polyclonal, newly derived T cells with low expression of inhibitory molecule PD-1 in tonsils define the phenotype of lymphocytes in children with Periodic Fever, Aphtous Stomatitis, Pharyngitis and Adenitis (PFAPA) syndrome.

scientific article published on 3 February 2015

Profiling of polychromatic flow cytometry data on B-cells reveals patients' clusters in common variable immunodeficiency.

scientific article published in November 2009

Quality assessment program for EuroFlow protocols: summary results of four-year (2010-2013) quality assurance rounds

scientific article published on 23 October 2014

Quantitative expression of regulatory and differentiation-related genes in the key steps of human hematopoiesis: The LeukoStage Database.

scientific article published on 7 December 2015

Regulation of Src family kinases involved in T cell receptor signaling by protein-tyrosine phosphatase CD148.

scientific article

Regulatory B cells in CVID patients fail to suppress multifunctional IFN-γ+ TNF-α+ CD4+ T cells differentiation.

scientific article published on 29 July 2015

Relevance of Antibody Validation for Flow Cytometry

scientific article published on 02 October 2019

Reproducibility of Flow Cytometry Through Standardization: Opportunities and Challenges

scientific article published on 08 October 2019

Signature profiles of CMV-specific T-cells in patients with CMV reactivation after hematopoietic SCT.

scientific article published on 8 November 2010

TEL/AML1 and immunoreceptor gene rearrangements—which comes first?

scientific article published in June 2005

The EuroFlow PID Orientation Tube for Flow Cytometric Diagnostic Screening of Primary Immunodeficiencies of the Lymphoid System

scientific article published on 04 March 2019

The Identification of (ETV6)/RUNX1-Regulated Genes in Lymphopoiesis Using Histone Deacetylase Inhibitors in ETV6/RUNX1-Positive Lymphoid Leukemic Cells

scientific article published on 26 February 2007

The TREC/KREC assay for the diagnosis and monitoring of patients with DiGeorge syndrome.

scientific article

Transfer of genomics information to flow cytometry: expression of CD27 and CD44 discriminates subtypes of acute lymphoblastic leukemia

scientific article published on 01 May 2005

Unrelated partially matched lymphocyte infusions in a patient with complete DiGeorge/CHARGE syndrome

scientific article published in June 2007

Utility of Ruxolitinib in a Child with Chronic Mucocutaneous Candidiasis Caused by a Novel STAT1 Gain-of-Function Mutation

scientific article published on 22 June 2018

p19-targeted ABD-derived protein variants inhibit IL-23 binding and exert suppressive control over IL-23-stimulated expansion of primary human IL-17+ T-cells

scientific article

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