List of works - Karen J Halliday

A DELLA in disguise: SPATULA restrains the growth of the developing Arabidopsis seedling

scientific article published in 2011

A role for an alternative splice variant of PIF6 in the control of Arabidopsis primary seed dormancy

scientific article published on 13 November 2009

A stress-free walk from Arabidopsis to crops ⬇️

scientific article published on December 17, 2010

An augmented Arabidopsis phenology model reveals seasonal temperature control of flowering time

scientific article

Arabidopsis cell expansion is controlled by a photothermal switch

scientific article published on 26 September 2014

Beta-AMYLASE4, a noncatalytic protein required for starch breakdown, acts upstream of three active beta-amylases in Arabidopsis chloroplasts

scientific article

Changes in photoperiod or temperature alter the functional relationships between phytochromes and reveal roles for phyD and phyE.

scientific article published in April 2003

Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis.

scientific article published on 9 January 2018

Cold and Light Control Seed Germination through the bHLH Transcription Factor SPATULA

article by Steven Penfield et al published November 2005 in Current Biology

DELLA-Mediated Cotyledon Expansion Breaks Coat-Imposed Seed Dormancy

De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis

scientific article

Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure

scientific article

Differential control of seed primary dormancy in Arabidopsis ecotypes by the transcription factor SPATULA

scientific article published on 10 June 2013

Expression of heterologous phytochromes A, B or C in transgenic tobacco plants alters vegetative development and flowering time.

scientific article published in November 1997

Fruit Development: New Directions for an Old Pathway ⬇️

scientific article published on December 21, 2010

HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES1 is required for circadian periodicity through the promotion of nucleo-cytoplasmic mRNA export in Arabidopsis

scientific article published on 19 November 2013

Inference on periodicity of circadian time series

scientific article published on 06 June 2013

Integration of light and auxin signaling ⬇️

scientific article

Interaction of light and temperature signalling

scientific article

Light receptor action is critical for maintaining plant biomass at warm ambient temperatures

article

Light-sensing phytochromes feel the heat

scientific article published in November 2016

Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature

scientific article

Mathematical models light up plant signaling

scientific article

Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock

scientific article published on October 2013

Molecular and genetic control of plant thermomorphogenesis

scientific article

Multiscale digital Arabidopsis predicts individual organ and whole-organism growth

scientific article

Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses

scientific article published in July 2003

Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures.

scientific article published on January 2013

Overexpression of rice phytochrome A partially complements phytochrome B deficiency in Arabidopsis

scientific article published on 01 January 1999

Paths through the phytochrome network

scientific article published on 05 February 2008

Photoreceptor effects on plant biomass, resource allocation, and metabolic state

scientific article published on 21 June 2016

Phytochrome B and at Least One Other Phytochrome Mediate the Accelerated Flowering Response of Arabidopsis thaliana L. to Low Red/Far-Red Ratio

article

Phytochrome control of flowering is temperature sensitive and correlates with expression of the floral integratorFT

scientific article published on 01 March 2003

Phytochrome coordinates Arabidopsis shoot and root development

article

Phytochrome regulates cellular response plasticity and the basic molecular machinery of leaf development

scientific article published on 01 June 2021

Phytochrome, metabolism and growth plasticity

scientific article published on 18 December 2017

Phytochrome-hormonal signalling networks

scientific article published in 2003

Phytochromes B, D, and E act redundantly to control multiple physiological responses in Arabidopsis

scientific article

Plant development: light exposure directs meristem fate

scientific article

Plant hormones: the interplay of brassinosteroids and auxin

scientific article

Prediction of photoperiodic regulators from quantitative gene circuit models.

scientific article published in December 2009

Regulation of Carotenoid Biosynthesis by Shade Relies on Specific Subsets of Antagonistic Transcription Factors and Cofactors

scientific article

SPATULA links daytime temperature and plant growth rate

scientific article published on 12 August 2010

Shedding light on flower development: phytochrome B regulates gynoecium formation in association with the transcription factor SPATULA.

scientific article

Skotomorphogenesis: The Dark Side of Light Signalling

scientific article published on 01 December 2008

Stochastic properties of the plant circadian clock

scientific article published on 31 August 2011

Strengths and limitations of period estimation methods for circadian data.

scientific article

The HY5-PIF regulatory module coordinates light and temperature control of photosynthetic gene transcription

scientific article

The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks

scientific article published on 10 October 2003

The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana ⬇️

scientific article published on 6 July 2015

The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

scientific article

The highs and lows of plant life: temperature and light interactions in development

scientific article

The rosette habit of Arabidopsis thaliana is dependent upon phytochrome action: novel phytochromes control internode elongation and flowering time

scientific article published on 01 December 1996

poc1: an Arabidopsis mutant perturbed in phytochrome signaling because of a T DNA insertion in the promoter of PIF3, a gene encoding a phytochrome-interacting bHLH protein.

scientific article

List of works by Karen J Halliday

A DELLA in disguise: SPATULA restrains the growth of the developing Arabidopsis seedling

A role for an alternative splice variant of PIF6 in the control of Arabidopsis primary seed dormancy

A stress-free walk from Arabidopsis to crops ⬇️

An augmented Arabidopsis phenology model reveals seasonal temperature control of flowering time

Arabidopsis cell expansion is controlled by a photothermal switch

Beta-AMYLASE4, a noncatalytic protein required for starch breakdown, acts upstream of three active beta-amylases in Arabidopsis chloroplasts

Changes in photoperiod or temperature alter the functional relationships between phytochromes and reveal roles for phyD and phyE.

Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis.

Cold and Light Control Seed Germination through the bHLH Transcription Factor SPATULA

DELLA-Mediated Cotyledon Expansion Breaks Coat-Imposed Seed Dormancy

De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis

Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure

Differential control of seed primary dormancy in Arabidopsis ecotypes by the transcription factor SPATULA

Expression of heterologous phytochromes A, B or C in transgenic tobacco plants alters vegetative development and flowering time.

Fruit Development: New Directions for an Old Pathway ⬇️

HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES1 is required for circadian periodicity through the promotion of nucleo-cytoplasmic mRNA export in Arabidopsis

Inference on periodicity of circadian time series

Integration of light and auxin signaling ⬇️

Interaction of light and temperature signalling

Light receptor action is critical for maintaining plant biomass at warm ambient temperatures

Light-sensing phytochromes feel the heat

Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature

Mathematical models light up plant signaling

Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock

Molecular and genetic control of plant thermomorphogenesis

Multiscale digital Arabidopsis predicts individual organ and whole-organism growth

Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses

Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures.

Overexpression of rice phytochrome A partially complements phytochrome B deficiency in Arabidopsis

Paths through the phytochrome network

Photoreceptor effects on plant biomass, resource allocation, and metabolic state

Phytochrome B and at Least One Other Phytochrome Mediate the Accelerated Flowering Response of Arabidopsis thaliana L. to Low Red/Far-Red Ratio

Phytochrome control of flowering is temperature sensitive and correlates with expression of the floral integratorFT

Phytochrome coordinates Arabidopsis shoot and root development

Phytochrome regulates cellular response plasticity and the basic molecular machinery of leaf development

Phytochrome, metabolism and growth plasticity

Phytochrome-hormonal signalling networks

Phytochromes B, D, and E act redundantly to control multiple physiological responses in Arabidopsis

Plant development: light exposure directs meristem fate

Plant hormones: the interplay of brassinosteroids and auxin

Prediction of photoperiodic regulators from quantitative gene circuit models.

Regulation of Carotenoid Biosynthesis by Shade Relies on Specific Subsets of Antagonistic Transcription Factors and Cofactors

SPATULA links daytime temperature and plant growth rate

Shedding light on flower development: phytochrome B regulates gynoecium formation in association with the transcription factor SPATULA.

Skotomorphogenesis: The Dark Side of Light Signalling

Stochastic properties of the plant circadian clock

Strengths and limitations of period estimation methods for circadian data.

The HY5-PIF regulatory module coordinates light and temperature control of photosynthetic gene transcription

The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks

The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana ⬇️

The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

The highs and lows of plant life: temperature and light interactions in development

The rosette habit of Arabidopsis thaliana is dependent upon phytochrome action: novel phytochromes control internode elongation and flowering time

poc1: an Arabidopsis mutant perturbed in phytochrome signaling because of a T DNA insertion in the promoter of PIF3, a gene encoding a phytochrome-interacting bHLH protein.