List of works - Takahisa Ikegami

(1)H, (13)C and (15)N chemical shift assignments of the NDH-1 complex subunit CupS.

scientific article published on 20 July 2014

1H, 13C and 15N resonance assignments of the first cadherin domain of Cadherin-related neuronal receptor (CNR)/protocadherin alpha

scientific article published on 01 April 2005

1H, 13C and 15N resonance assignments of the pyrazinamidase from Mycobacterium tuberculosis

scientific article published on 29 July 2006

A Common Substrate Recognition Mode Conserved between Katanin p60 and VPS4 Governs Microtubule Severing and Membrane Skeleton Reorganization

scientific article

A Method for Systematic Assessment of Intrinsically Disordered Protein Regions by NMR.

scientific article published on 10 July 2015

A novel chitin-binding mode of the chitin-binding domain of chitinase A1 from Bacillus circulans WL-12 revealed by solid-state NMR

scientific article published on 01 September 2018

A novel way to express proline-selectively labeled proteins with a wheat germ cell-free protein synthesis system.

scientific article

A robust approach to calculate entropy change based on density functional theory in the energy representation.

scientific article published in December 2009

An efficient HN(CA)NH pluse scheme for triple-resonance 4D correlation of sequential amide protons and nitrogens-15 in deuterated proteins

scientific article published on 01 January 1997

Arabidopsis Tic62 and ferredoxin-NADP(H) oxidoreductase form light-regulated complexes that are integrated into the chloroplast redox poise.

scientific article published on 29 December 2009

Association of Ferredoxin:NADP+ oxidoreductase with the photosynthetic apparatus modulates electron transfer in Chlamydomonas reinhardtii.

scientific article published on 7 June 2017

Binding energetics of ferredoxin-NADP+ reductase with ferredoxin and its relation to function

scientific article published on 07 July 2011

Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Chlamydomonas reinhardtii

scientific article published on 27 November 2019

Characterization of DNA-binding activity in the N-terminal domain of the DNA methyltransferase Dnmt3a

scientific article published on 01 July 2011

Comparative study of the different mechanisms for zinc ion stress sensing in two cyanobacterial strains, Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803.

scientific article published on 6 July 2012

Cores and pH-dependent dynamics of ferredoxin-NADP+ reductase revealed by hydrogen/deuterium exchange

scientific article published on 27 December 2006

Direct observation of minimum-sized amyloid fibrils using solution NMR spectroscopy.

scientific article published on 11 November 2010

Effects of a reduced disulfide bond on aggregation properties of the human IgG1 CH3 domain.

scientific article published on 5 March 2015

Effects of thermal treatments on the recovery of adsorbed water and photocatalytic activities of TiO2 photocatalytic systems.

scientific article

Electron transfer of site-specifically cross-linked complexes between ferredoxin and ferredoxin-NADP(+) reductase.

scientific article published on 27 October 2010

Evaluation of the stability of an SR398/GroES chaperonin complex

scientific article published on 21 February 2014

Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase

scientific article

Expression, refolding, and purification of active diacetylchitobiose deacetylase from Pyrococcus horikoshii.

scientific article published on 17 June 2012

Flexibility of GroES mobile loop is required for efficient chaperonin function

scientific article published on 25 May 2012

Functional conformer of c-Myb DNA-binding domain revealed by variable temperature studies.

scientific article published on 7 September 2015

Heat of supersaturation-limited amyloid burst directly monitored by isothermal titration calorimetry

scientific article

Heat-induced irreversible denaturation of the camelid single domain VHH antibody is governed by chemical modifications.

scientific article

Identification of a new interaction mode between the Src homology 2 domain of C-terminal Src kinase (Csk) and Csk-binding protein/phosphoprotein associated with glycosphingolipid microdomains.

scientific article

Immunogenicity of whole-parasite vaccines against Plasmodium falciparum involves malarial hemozoin and host TLR9.

scientific article published in January 2010

Improved protein overexpression and purification strategies for structural studies of cyanobacterial metal-responsive transcription factor, SmtB from marine Synechococcus sp. PCC 7002.

scientific article published in December 2013

Intermolecular31P−15N and31P−1H Scalar Couplings Across Hydrogen Bonds Formed between a Protein and a Nucleotide

scientific article published in 2000

Intrinsic disorder mediates cooperative signal transduction in STIM1.

scientific article published on 17 March 2014

Kinetic intermediates of β(2)-microglobulin fibril elongation probed by pulse-labeling H/D exchange combined with NMR analysis

scientific article published on 23 November 2010

Membrane-induced alteration of the secondary structure in the SWAP-70 pleckstrin homology domain.

scientific article

Molecular interaction of ferredoxin and ferredoxin-NADP+ reductase from human malaria parasite.

scientific article

NMR assignment of the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus

scientific article published on 03 October 2006

NMR structure of the DNA decamer duplex containing double T*G mismatches of cis-syn cyclobutane pyrimidine dimer: implications for DNA damage recognition by the XPC-hHR23B complex.

scientific article

NMR study of the electron transfer complex of plant ferredoxin and sulfite reductase: mapping the interaction sites of ferredoxin.

scientific article published on 9 February 2006

NMR study of xenotropic murine leukemia virus-related virus protease in a complex with amprenavir.

scientific article published on 25 July 2012

NOE distance and dihedral angle restraints to calculate the solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus

scientific article

Non-covalent forces tune the electron transfer complex between ferredoxin and sulfite reductase to optimize enzymatic activity. ⬇️

scientific article

Novel techniques for weak alignment of proteins in solution using chemical tags coordinating lanthanide ions.

scientific article

Optimized co-solute paramagnetic relaxation enhancement for the rapid NMR analysis of a highly fibrillogenic peptide.

scientific article published on 28 March 2015

Orexin-A is composed of a highly conserved C-terminal and a specific, hydrophilic N-terminal region, revealing the structural basis of specific recognition by the orexin-1 receptor

scientific article published in July 2006

Physicochemical nature of interfaces controlling ferredoxin NADP(+) reductase activity through its interprotein interactions with ferredoxin

scientific article published on 16 June 2015

Preparation and conformational analysis of C-glycosyl beta(2)- and beta/beta(2)-peptides

scientific article published on 23 January 2009

RNA polymerase II bypasses 8-oxoguanine in the presence of transcription elongation factor TFIIS.

scientific article

Regulation of Bin1 SH3 domain binding by phosphoinositides

scientific article

Resonance assignments, solution structure, and backbone dynamics of the DNA- and RPA-binding domain of human repair factor XPA.

scientific article

Sensitivity enhancement by sequential data acquisition for <sup>13</sup>C-direct detection NMR

scientific article published on 26 November 2020

Solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus

scientific article

Solution structure of the chitin-binding domain 1 (ChBD1) of a hyperthermophilic chitinase from Pyrococcus furiosus

scientific article

Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1

scientific article

Solution structure of the fibronectin type III domain from Bacillus circulans WL-12 chitinase A1

scientific article

Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA

scientific article

Spatial Overlap of Claudin- and Phosphatidylinositol Phosphate-Binding Sites on the First PDZ Domain of Zonula Occludens 1 Studied by NMR.

scientific article published on 26 September 2018

Specific binding of CO to tetraheme cytochrome c3

scientific article published on 01 March 2006

Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer

scientific article

Structural basis of the recognition of the SAMP motif of adenomatous polyposis coli by the Src-homology 3 domain

scientific article

Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments

scientific article

Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin

scientific article

Structure of the cadherin-related neuronal receptor/protocadherin-alpha first extracellular cadherin domain reveals diversity across cadherin families

scientific article published on 17 August 2006

Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3

scientific article

Targeting AMAP1 and cortactin binding bearing an atypical src homology 3/proline interface for prevention of breast cancer invasion and metastasis

scientific article

The cyanobacterial cytochrome b6f subunit PetP adopts an SH3 fold in solution

scientific article

The structure and conformational switching of Rap1B

scientific article

Thermodynamic effects of multiple protein conformations on stability and DNA binding.

scientific article

Utilization of lysine ¹³C-methylation NMR for protein-protein interaction studies

scientific article published on 06 December 2012

Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints

scientific article

X-ray Structure and Nuclear Magnetic Resonance Analysis of the Interaction Sites of the Ga-Substituted Cyanobacterial Ferredoxin

scientific article

X-ray structure of an asymmetrical trimeric ferredoxin-photosystem I complex.

scientific article published on 2 April 2018

List of works by Takahisa Ikegami

(1)H, (13)C and (15)N chemical shift assignments of the NDH-1 complex subunit CupS.

1H, 13C and 15N resonance assignments of the first cadherin domain of Cadherin-related neuronal receptor (CNR)/protocadherin alpha

1H, 13C and 15N resonance assignments of the pyrazinamidase from Mycobacterium tuberculosis

A Common Substrate Recognition Mode Conserved between Katanin p60 and VPS4 Governs Microtubule Severing and Membrane Skeleton Reorganization

A Method for Systematic Assessment of Intrinsically Disordered Protein Regions by NMR.

A novel chitin-binding mode of the chitin-binding domain of chitinase A1 from Bacillus circulans WL-12 revealed by solid-state NMR

A novel way to express proline-selectively labeled proteins with a wheat germ cell-free protein synthesis system.

A robust approach to calculate entropy change based on density functional theory in the energy representation.

An efficient HN(CA)NH pluse scheme for triple-resonance 4D correlation of sequential amide protons and nitrogens-15 in deuterated proteins

Arabidopsis Tic62 and ferredoxin-NADP(H) oxidoreductase form light-regulated complexes that are integrated into the chloroplast redox poise.

Association of Ferredoxin:NADP+ oxidoreductase with the photosynthetic apparatus modulates electron transfer in Chlamydomonas reinhardtii.

Binding energetics of ferredoxin-NADP+ reductase with ferredoxin and its relation to function

Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Chlamydomonas reinhardtii

Characterization of DNA-binding activity in the N-terminal domain of the DNA methyltransferase Dnmt3a

Comparative study of the different mechanisms for zinc ion stress sensing in two cyanobacterial strains, Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803.

Cores and pH-dependent dynamics of ferredoxin-NADP+ reductase revealed by hydrogen/deuterium exchange

Direct observation of minimum-sized amyloid fibrils using solution NMR spectroscopy.

Effects of a reduced disulfide bond on aggregation properties of the human IgG1 CH3 domain.

Effects of thermal treatments on the recovery of adsorbed water and photocatalytic activities of TiO2 photocatalytic systems.

Electron transfer of site-specifically cross-linked complexes between ferredoxin and ferredoxin-NADP(+) reductase.

Evaluation of the stability of an SR398/GroES chaperonin complex

Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase

Expression, refolding, and purification of active diacetylchitobiose deacetylase from Pyrococcus horikoshii.

Flexibility of GroES mobile loop is required for efficient chaperonin function

Functional conformer of c-Myb DNA-binding domain revealed by variable temperature studies.

Heat of supersaturation-limited amyloid burst directly monitored by isothermal titration calorimetry

Heat-induced irreversible denaturation of the camelid single domain VHH antibody is governed by chemical modifications.

Identification of a new interaction mode between the Src homology 2 domain of C-terminal Src kinase (Csk) and Csk-binding protein/phosphoprotein associated with glycosphingolipid microdomains.

Immunogenicity of whole-parasite vaccines against Plasmodium falciparum involves malarial hemozoin and host TLR9.

Improved protein overexpression and purification strategies for structural studies of cyanobacterial metal-responsive transcription factor, SmtB from marine Synechococcus sp. PCC 7002.

Intermolecular31P−15N and31P−1H Scalar Couplings Across Hydrogen Bonds Formed between a Protein and a Nucleotide

Intrinsic disorder mediates cooperative signal transduction in STIM1.

Kinetic intermediates of β(2)-microglobulin fibril elongation probed by pulse-labeling H/D exchange combined with NMR analysis

Membrane-induced alteration of the secondary structure in the SWAP-70 pleckstrin homology domain.

Molecular interaction of ferredoxin and ferredoxin-NADP+ reductase from human malaria parasite.

NMR assignment of the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus

NMR structure of the DNA decamer duplex containing double T*G mismatches of cis-syn cyclobutane pyrimidine dimer: implications for DNA damage recognition by the XPC-hHR23B complex.

NMR study of the electron transfer complex of plant ferredoxin and sulfite reductase: mapping the interaction sites of ferredoxin.

NMR study of xenotropic murine leukemia virus-related virus protease in a complex with amprenavir.

NOE distance and dihedral angle restraints to calculate the solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus

Non-covalent forces tune the electron transfer complex between ferredoxin and sulfite reductase to optimize enzymatic activity. ⬇️

Novel techniques for weak alignment of proteins in solution using chemical tags coordinating lanthanide ions.

Optimized co-solute paramagnetic relaxation enhancement for the rapid NMR analysis of a highly fibrillogenic peptide.

Orexin-A is composed of a highly conserved C-terminal and a specific, hydrophilic N-terminal region, revealing the structural basis of specific recognition by the orexin-1 receptor

Physicochemical nature of interfaces controlling ferredoxin NADP(+) reductase activity through its interprotein interactions with ferredoxin

Preparation and conformational analysis of C-glycosyl beta(2)- and beta/beta(2)-peptides

RNA polymerase II bypasses 8-oxoguanine in the presence of transcription elongation factor TFIIS.

Regulation of Bin1 SH3 domain binding by phosphoinositides

Resonance assignments, solution structure, and backbone dynamics of the DNA- and RPA-binding domain of human repair factor XPA.

Sensitivity enhancement by sequential data acquisition for <sup>13</sup>C-direct detection NMR

Solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus

Solution structure of the chitin-binding domain 1 (ChBD1) of a hyperthermophilic chitinase from Pyrococcus furiosus

Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1

Solution structure of the fibronectin type III domain from Bacillus circulans WL-12 chitinase A1

Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA

Spatial Overlap of Claudin- and Phosphatidylinositol Phosphate-Binding Sites on the First PDZ Domain of Zonula Occludens 1 Studied by NMR.

Specific binding of CO to tetraheme cytochrome c3

Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer

Structural basis of the recognition of the SAMP motif of adenomatous polyposis coli by the Src-homology 3 domain

Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments

Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin

Structure of the cadherin-related neuronal receptor/protocadherin-alpha first extracellular cadherin domain reveals diversity across cadherin families

Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3

Targeting AMAP1 and cortactin binding bearing an atypical src homology 3/proline interface for prevention of breast cancer invasion and metastasis

The cyanobacterial cytochrome b6f subunit PetP adopts an SH3 fold in solution

The structure and conformational switching of Rap1B

Thermodynamic effects of multiple protein conformations on stability and DNA binding.

Utilization of lysine ¹³C-methylation NMR for protein-protein interaction studies

Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints

X-ray Structure and Nuclear Magnetic Resonance Analysis of the Interaction Sites of the Ga-Substituted Cyanobacterial Ferredoxin

X-ray structure of an asymmetrical trimeric ferredoxin-photosystem I complex.