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List of works by Pascal Simonet

A novel and rapid method for synthesizing positive controls and standards for quantitative PCR.

scientific article

Accessing the soil metagenome for studies of microbial diversity.

scientific article

Advantages of the metagenomic approach for soil exploration: reply from Vogel et al

scientific article published in 2009

Antibiotic-resistant soil bacteria in transgenic plant fields

scholarly article

Back to the Future of Soil Metagenomics

scientific article

Biogeography of Soil Microbial Communities: A Review and a Description of the Ongoing French National Initiative

article

Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative

article

Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach.

scientific article

Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library

scientific article

Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils

scientific article published on 4 May 2010

Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance.

scientific article published on 7 May 2018

Degradation and transformability of DNA from transgenic leaves.

scientific article

Describing microbial communities and performing global comparisons in the 'omic era.

scientific article

Detection of potential transgenic plant DNA recipients among soil bacteria

scientific article published in January 2007

Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria

scientific article published in February 2006

Development of a new tool to improve gene transfer frequency calculations.

scientific article published on 27 May 2011

Development of metagenomic DNA shuffling for the construction of a xenobiotic gene.

scientific article published in April 2006

Drugs from hidden bugs: their discovery via untapped resources

scientific article

Editorial: Special section of FEMS Microbiology Ecology on the environmental dimension of antibiotic resistance

scientific article published on 7 September 2016

Efficient procedure for purification of obligate intracellular Wolbachia pipientis and representative amplification of its genome by multiple-displacement amplification.

scientific article

Evaluation of functional gene enrichment in a soil metagenomic clone library

scientific article

Exploration of horizontal gene transfer between transplastomic tobacco and plant-associated bacteria.

scientific article published on 31 May 2011

Extracellular plant DNA in Geneva groundwater and traditional artesian drinking water fountains

scientific article

Fate of invading bacteria in soil and survival of transformants after simulated uptake of transgenes, as evaluated by a model system based on lindane degradation ⬇️

scientific article published on February 10, 2012

Fate of transgenic plant DNA in the environment

scientific article published on January 2007

Functional Metagenomics: Construction and High-Throughput Screening of Fosmid Libraries for Discovery of Novel Carbohydrate-Active Enzymes.

scientific article published in January 2016

High molecular weight DNA recovery from soils prerequisite for biotechnological metagenomic library construction

scientific article

Horizontal gene transfer regulation in bacteria as a "spandrel" of DNA repair mechanisms

scientific article

Human dissemination of genes and microorganisms in Earth's Critical Zone ⬇️

scientific article published on 20 December 2017

In situ transfer of antibiotic resistance genes from transgenic (transplastomic) tobacco plants to bacteria

scientific article

Influence of DNA conformation and role of comA and recA on natural transformation in Ralstonia solanacearum

scientific article published in June 2009

Influence of humans on evolution and mobilization of environmental antibiotic resistome

scientific article published on July 2013

Integrity and biological activity of DNA after UV exposure.

scientific article published in April 2010

Intergeneric transfer of chromosomal and conjugative plasmid genes between Ralstonia solanacearum and Acinetobacter sp. BD413

scientific article published on 01 January 2003

Isolation of lightning-competent soil bacteria

scientific article published on October 2004

Large-scale metagenomic-based study of antibiotic resistance in the environment

scientific article published on 8 May 2014

Leaching and transformability of transgenic DNA in unsaturated soil columns

scientific article published on 13 October 2009

Life on human surfaces: skin metagenomics

scientific article

Long-term persistence and bacterial transformation potential of transplastomic plant DNA in soil.

scientific article published on 20 May 2010

Magnetic nanoparticle DNA labeling for individual bacterial cell detection and recovery.

scientific article

Mastering methodological pitfalls for surviving the metagenomic jungle

scientific article

Meeting report: 1st international functional metagenomics workshop may 7-8, 2012, st. Jacobs, ontario, Canada

scientific article

Metagenomic analysis reveals that bacteriophages are reservoirs of antibiotic resistance genes.

scientific article published on 3 June 2016

Metagenomic comparison of direct and indirect soil DNA extraction approaches

scientific article published on 25 June 2011

Metagenomic exploration of antibiotic resistance in soil

scientific article published on 23 May 2011

Metagenomic mining for microbiologists.

scientific article

Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome

scientific article published on 25 May 2017

Microbial community development and unseen diversity recovery in inoculated sterile soil

article

Microbial mass movements

scientific article published in September 2017

Microbial soil community analyses for forensic science: Application to a blind test.

scientific article published on 9 December 2016

Natural Pseudomonas sp. strain N3 in artificial soil microcosms

scientific article

Natural transformation in the Ralstonia solanacearum species complex: number and size of DNA that can be transferred

scientific article

Natural transformation-based foreign DNA acquisition in a Ralstonia solanacearum mutS mutant

scientific article

Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones

scientific article published on September 2004

Plasmid-encoded gamma-hexachlorocyclohexane degradation genes and insertion sequences in Sphingobium francense (ex-Sphingomonas paucimobilis Sp+).

scientific article

Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products

scientific article

Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics.

scientific article published on 30 April 2015

RisaAligner software for aligning fluorescence data between Agilent 2100 Bioanalyzer chips: Application to soil microbial community analysis.

scientific article

Soil bacterial community shifts after chitin enrichment: an integrative metagenomic approach

scientific article (publication date: 2013)

Soil characterisation by bacterial community analysis for forensic applications: A quantitative comparison of environmental technologies.

scientific article

Soil microbial diversity: an ISO standard for soil DNA extraction

article by Laurent Philippot et al published 6 July 2010 in Journal of Soils and Sediments

Soil-specific limitations for access and analysis of soil microbial communities by metagenomics ⬇️

scientific article published on June 28, 2011

Strategy for in situ detection of natural transformation-based horizontal gene transfer events.

scientific article published on 28 December 2007

Structure, fluctuation and magnitude of a natural grassland soil metagenome.

scientific article

Survival and electrotransformation of Pseudomonas syringae strains under simulated cloud-like conditions.

scientific article

TerraGenome: a consortium for the sequencing of a soil metagenome

scientific article published in 2009

The future of skin metagenomics.

scientific article

The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria.

scientific article

Type I polyketide synthases may have evolved through horizontal gene transfer

scientific article published on 16 May 2005

Variability in the Response of Bacterial Community Assembly to Environmental Selection and Biotic Factors Depends on the Immigrated Bacteria, as Revealed by a Soil Microcosm Experiment

scientific article published on 03 December 2019

Visual evidence of horizontal gene transfer between plants and bacteria in the phytosphere of transplastomic tobacco

scientific article published on 27 March 2009

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