List of works - Manoj Bhasin

PGC-1α promotes recovery after acute kidney injury during systemic inflammation in mice

scientific article

ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST.

scientific article published on July 2004

A metabolic prosurvival role for PML in breast cancer.

scientific article

Curative and beta cell regenerative effects of alpha1-antitrypsin treatment in autoimmune diabetic NOD mice.

scholarly article

PSLpred: prediction of subcellular localization of bacterial proteins

scientific article published on 04 February 2005

Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search

scientific article

PGC1α drives NAD biosynthesis linking oxidative metabolism to renal protection.

scientific article

Genomic counter-stress changes induced by the relaxation response

scientific article

Identification of the transcription factor single-minded homologue 2 as a potential biomarker and immunotherapy target in prostate cancer

scientific article

MHCBN: a comprehensive database of MHC binding and non-binding peptides

scientific article (publication date: 22 March 2003)

Relaxation response induces temporal transcriptome changes in energy metabolism, insulin secretion and inflammatory pathways

scientific article

MSC-regulated microRNAs converge on the transcription factor FOXP2 and promote breast cancer metastasis

scientific article published on 16 October 2014

Classification of nuclear receptors based on amino acid composition and dipeptide composition.

scientific article published on 23 March 2004

Analysis and prediction of affinity of TAP binding peptides using cascade SVM.

scientific article published in March 2004

SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence.

scientific article published on 22 January 2004

GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors.

scientific article published on July 2004

Reduced PDEF expression increases invasion and expression of mesenchymal genes in prostate cancer cells.

scientific article published on May 2007

Overcoming Memory T-Cell Responses for Induction of Delayed Tolerance in Nonhuman Primates

scientific article published on November 4, 2011

The receptor tyrosine kinase Axl is an essential regulator of prostate cancer proliferation and tumor growth and represents a new therapeutic target.

scientific article

A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes.

scientific article published in January 2007

The KDM3A-KLF2-IRF4 axis maintains myeloma cell survival

scientific article published on 5 January 2016

Bioinformatic identification and characterization of human endothelial cell-restricted genes

scientific article

Anti-S1P Antibody as a Novel Therapeutic Strategy for VEGFR TKI-Resistant Renal Cancer.

scientific article published on 14 January 2015

Optimizing a proteomics platform for urine biomarker discovery

scientific article

RhoJ is an endothelial cell-restricted Rho GTPase that mediates vascular morphogenesis and is regulated by the transcription factor ERG.

scientific article

Bench-to-bedside review: future novel diagnostics for sepsis - a systems biology approach

scientific article

MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes

scientific article

ERG is required for the differentiation of embryonic stem cells along the endothelial lineage

scientific article published on 23 December 2009

Recognition and classification of histones using support vector machine

scientific article

Evidence for a role of the histone deacetylase SIRT6 in DNA damage response of multiple myeloma cells

scientific article published on 16 December 2015

Combinatorial effect of non-steroidal anti-inflammatory drugs and NF-κB inhibitors in ovarian cancer therapy

scientific article

Temporal network based analysis of cell specific vein graft transcriptome defines key pathways and hub genes in implantation injury

scientific article (publication date: 2012)

Detecting Microbial Dysbiosis Associated with Pediatric Crohn Disease Despite the High Variability of the Gut Microbiota

scientific article published on 19 January 2016

Gene expression profile of mouse prostate tumors reveals dysregulations in major biological processes and identifies potential murine targets for preclinical development of human prostate cancer therapy

scientific article

Requirement of the epithelium-specific Ets transcription factor Spdef for mucous gland cell function in the gastric antrum.

scientific article

Multicenter evaluation of a standardized protocol for noninvasive gene expression profiling

scientific article (publication date: July 2013)

Novel non-invasive biomarkers that distinguish between benign prostate hyperplasia and prostate cancer.

scientific article published on 11 April 2015

The role of TNF-α in mice with type 1- and 2- diabetes

scientific article (publication date: 2012)

A20 modulates lipid metabolism and energy production to promote liver regeneration

scientific article

Genomic and clinical effects associated with a relaxation response mind-body intervention in patients with irritable bowel syndrome and inflammatory bowel disease

scientific article published on 30 April 2015

Computational repositioning and preclinical validation of pentamidine for renal cell cancer.

scientific article

GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors

scientific article

Meta-analysis of transcriptome data identifies a novel 5-gene pancreatic adenocarcinoma classifier

scientific article

Multicenter Analysis of Immune Biomarkers and Heart Transplant Outcomes: Results of the Clinical Trials in Organ Transplantation-05 Study

scientific article published on 10 August 2015

p16Ink4a or p19Arf loss contributes to Tal1-induced leukemogenesis in mice

scientific article published on 01 May 2006

Quantitative proteomic analysis in HCV-induced HCC reveals sets of proteins with potential significance for racial disparity.

scientific article published on October 2013

HIV-1 infection impairs regulatory T-cell suppressive capacity on a per-cell basis.

scientific article published on 23 March 2014

Identification of key regulators of pancreatic cancer progression through multidimensional systems-level analysis

scientific article published on 3 May 2016

BhairPred: prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques.

scientific article

Prevention of nonimmunologic loss of transplanted islets in monkeys.

scientific article published on 9 June 2014

List of works by Manoj Bhasin

PGC-1α promotes recovery after acute kidney injury during systemic inflammation in mice

ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST.

A metabolic prosurvival role for PML in breast cancer.

Curative and beta cell regenerative effects of alpha1-antitrypsin treatment in autoimmune diabetic NOD mice.

PSLpred: prediction of subcellular localization of bacterial proteins

Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search

PGC1α drives NAD biosynthesis linking oxidative metabolism to renal protection.

Genomic counter-stress changes induced by the relaxation response

Identification of the transcription factor single-minded homologue 2 as a potential biomarker and immunotherapy target in prostate cancer

MHCBN: a comprehensive database of MHC binding and non-binding peptides

Relaxation response induces temporal transcriptome changes in energy metabolism, insulin secretion and inflammatory pathways

MSC-regulated microRNAs converge on the transcription factor FOXP2 and promote breast cancer metastasis

Classification of nuclear receptors based on amino acid composition and dipeptide composition.

Analysis and prediction of affinity of TAP binding peptides using cascade SVM.

SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence.

GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors.

Reduced PDEF expression increases invasion and expression of mesenchymal genes in prostate cancer cells.

Overcoming Memory T-Cell Responses for Induction of Delayed Tolerance in Nonhuman Primates

The receptor tyrosine kinase Axl is an essential regulator of prostate cancer proliferation and tumor growth and represents a new therapeutic target.

A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes.

The KDM3A-KLF2-IRF4 axis maintains myeloma cell survival

Bioinformatic identification and characterization of human endothelial cell-restricted genes

Anti-S1P Antibody as a Novel Therapeutic Strategy for VEGFR TKI-Resistant Renal Cancer.

Optimizing a proteomics platform for urine biomarker discovery

RhoJ is an endothelial cell-restricted Rho GTPase that mediates vascular morphogenesis and is regulated by the transcription factor ERG.

Bench-to-bedside review: future novel diagnostics for sepsis - a systems biology approach

MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes

ERG is required for the differentiation of embryonic stem cells along the endothelial lineage

Recognition and classification of histones using support vector machine

Evidence for a role of the histone deacetylase SIRT6 in DNA damage response of multiple myeloma cells

Combinatorial effect of non-steroidal anti-inflammatory drugs and NF-κB inhibitors in ovarian cancer therapy

Temporal network based analysis of cell specific vein graft transcriptome defines key pathways and hub genes in implantation injury

Detecting Microbial Dysbiosis Associated with Pediatric Crohn Disease Despite the High Variability of the Gut Microbiota

Gene expression profile of mouse prostate tumors reveals dysregulations in major biological processes and identifies potential murine targets for preclinical development of human prostate cancer therapy

Requirement of the epithelium-specific Ets transcription factor Spdef for mucous gland cell function in the gastric antrum.

Multicenter evaluation of a standardized protocol for noninvasive gene expression profiling

Novel non-invasive biomarkers that distinguish between benign prostate hyperplasia and prostate cancer.

The role of TNF-α in mice with type 1- and 2- diabetes

A20 modulates lipid metabolism and energy production to promote liver regeneration

Genomic and clinical effects associated with a relaxation response mind-body intervention in patients with irritable bowel syndrome and inflammatory bowel disease

Computational repositioning and preclinical validation of pentamidine for renal cell cancer.

GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors

Meta-analysis of transcriptome data identifies a novel 5-gene pancreatic adenocarcinoma classifier

Multicenter Analysis of Immune Biomarkers and Heart Transplant Outcomes: Results of the Clinical Trials in Organ Transplantation-05 Study

p16Ink4a or p19Arf loss contributes to Tal1-induced leukemogenesis in mice

Quantitative proteomic analysis in HCV-induced HCC reveals sets of proteins with potential significance for racial disparity.

HIV-1 infection impairs regulatory T-cell suppressive capacity on a per-cell basis.

Identification of key regulators of pancreatic cancer progression through multidimensional systems-level analysis

BhairPred: prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques.

Prevention of nonimmunologic loss of transplanted islets in monkeys.