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List of works by Ernesto Nakayasu

A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets

scientific article published on 23 November 2021

A Legionella Effector Disrupts Host Cytoskeletal Structure by Cleaving Actin

scientific article

A heme-degradation pathway in a blood-sucking insect

scholarly article

A novel approach for the characterisation of proteoglycans and biosynthetic enzymes in a snail model

article

A novel link between Fic (filamentation induced by cAMP)-mediated adenylylation/AMPylation and the unfolded protein response

scientific article published on 19 January 2015

A unique deubiquitinase that deconjugates phosphoribosyl-linked protein ubiquitination

scientific article published on 12 May 2017

Absence of nitric-oxide synthase in sequentially purified rat liver mitochondria.

scientific article published on 16 April 2009

Activated ClpP kills persisters and eradicates a chronic biofilm infection

scientific article

Addressing the challenge of soil metaproteome complexity by improving metaproteome depth of coverage through two-dimensional liquid chromatography

scholarly article by Stephen J. Callister et al published October 2018 in Soil Biology and Biochemistry

An integrated multi-omics approach identifies the landscape of interferon-α-mediated responses of human pancreatic beta cells

scientific article published on 22 May 2020

Analysis of the Salmonella regulatory network suggests involvement of SsrB and H-NS in σ(E)-regulated SPI-2 gene expression

scientific article

Ancient Regulatory Role of Lysine Acetylation in Central Metabolism.

scientific article

Bacterial Longevity Requires Protein Synthesis and a Stringent Response

scientific article published on 15 October 2019

C-Npys (S-3-nitro-2-pyridinesulfenyl) and peptide derivatives can inhibit a serine-thiol proteinase activity from Paracoccidioides brasiliensis.

scientific article

Characterization of Lipids and Proteins Associated to the Cell Wall of the Acapsular Mutant Cryptococcus neoformans Cap 67.

scientific article

Characterization of proteinases from the midgut of Rhipicephalus (Boophilus) microplus involved in the generation of antimicrobial peptides

scientific article

Characterization of yeast extracellular vesicles: evidence for the participation of different pathways of cellular traffic in vesicle biogenesis

scientific article

Comparative Molecular and Immunoregulatory Analysis of Extracellular Vesicles from Candida albicans and Candida auris

scientific article published on 24 August 2021

Comparative phosphoproteomics reveals components of host cell invasion and post-transcriptional regulation during Francisella infection

scientific article published on 22 August 2013

Complement inactivating proteins and intraspecies venom variation in Crotalus oreganus helleri

scientific article published on 25 October 2006

Compositional and immunobiological analyses of extracellular vesicles released by Candida albicans

scientific article published on 22 November 2014

Concentration-dependent protein loading of extracellular vesicles released by Histoplasma capsulatum after antibody treatment and its modulatory action upon macrophages.

scientific article

Corrigendum to “Trypanosoma cruzi histone H1 is phosphorylated in a typical cyclin dependent kinase site accordingly to the cell cycle” [Mol. Biochem. Parasitol. 140 (2005) 75–86]

scholarly article published in Molecular and Biochemical Parasitology

Cytomegalovirus pp65 limits dissemination but is dispensable for persistence.

scientific article published on April 2014

DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data

scientific article published in 2022

Development of nanoinjector devices for electrospray ionization - tandem mass spectrometry (ESI-MSn)

article

Differential Antitumor Effects of IgG and IgM Monoclonal Antibodies and Their Synthetic Complementarity-Determining Regions Directed to New Targets of B16F10-Nex2 Melanoma Cells

scientific article

Digestion, Purification, and Enrichment of Protein Samples for Mass Spectrometry

scientific article published on September 2015

Diversity of anti-haemostatic proteins in the salivary glands of Rhodnius species transmitters of Chagas disease in the greater Amazon.

scientific article published in July 2011

Dynamic remodeling of lipids coincides with dengue virus replication in the midgut of Aedes aegypti mosquitoes

scientific article published on 15 February 2018

Enhanced nitrosative stress during Trypanosoma cruzi infection causes nitrotyrosine modification of host proteins: implications in Chagas' disease

scientific article

Evaluation of selected binding domains for the analysis of ubiquitinated proteomes

scientific article published on 07 May 2013

Exosomes from Plasmodium yoelii-infected reticulocytes protect mice from lethal infections.

scientific article

Extending Classification Algorithms to Case-Control Studies

scientific article published on 15 July 2019

Extracellular Vesicles from Trypanosoma brucei Mediate Virulence Factor Transfer and Cause Host Anemia

scientific article

Extracellular vesicles produced by Cryptococcus neoformans contain protein components associated with virulence.

scientific article published on 26 November 2007

GPIomics: global analysis of glycosylphosphatidylinositol-anchored molecules of Trypanosoma cruzi.

scientific article published on 07 April 2009

Genes essential for phototrophic growth by a purple alphaproteobacterium

scientific article

Global analysis of Salmonella alternative sigma factor E on protein translation.

scientific article published on 27 February 2015

Global analysis of protein palmitoylation in African trypanosomes.

scientific article

Histoplasma capsulatum heat-shock 60 orchestrates the adaptation of the fungus to temperature stress

scientific article

Identification of Fic-1 as an enzyme that inhibits bacterial DNA replication by AMPylating GyrB, promoting filament formation

scientific article published on 26 January 2016

Identification of Novel Host Interactors of Effectors Secreted by Salmonella and Citrobacter.

scientific article published on 12 July 2016

Identification of Salmonella Typhimurium Deubiquitinase SseL Substrates by Immunoaffinity Enrichment and Quantitative Proteomic Analysis.

scientific article

Identification of human plasma proteins associated with the cell wall of the pathogenic fungus Paracoccidioides brasiliensis.

scientific article published on April 2013

Indoxacarb biotransformation in the German cockroach.

scientific article

InvS Coordinates Expression of PrgH and FimZ and Is Required for Invasion of Epithelial Cells by Salmonella enterica serovar Typhimurium. ⬇️

scientific article published on 24 April 2017

Label-free quantitative proteomics reveals differentially regulated proteins in the latex of sticky diseased Carica papaya L. plants.

scientific article

Legionella pneumophila inhibits immune signalling via MavC-mediated transglutaminase-induced ubiquitination of UBE2N

scientific article published on 12 November 2018

Legionella pneumophila regulates the activity of UBE2N by deamidase-mediated deubiquitination

scientific article published on 11 December 2019

Lipidomic analysis of extracellular vesicles from the pathogenic phase of Paracoccidioides brasiliensis.

scientific article

Listeria monocytogenes virulence factors, including listeriolysin O, are secreted in biologically active extracellular vesicles

scientific article published on 30 November 2018

MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses

scientific article published on 10 May 2016

MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling

scientific article published on 16 January 2017

Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation

scientific article

Multi-omic data integration links deleted in breast cancer 1 (DBC1) degradation to chromatin remodeling in inflammatory response

scientific article

Multi-omics Signature of Candida auris, an Emerging and Multidrug-Resistant Pathogen

scientific article published on 11 June 2019

Multicopy Single-Stranded DNA Directs Intestinal Colonization of Enteric Pathogens

scientific article

Post-translational modifications of Trypanosoma cruzi histone H4.

scientific article published on 18 September 2006

Prediction of the development of islet autoantibodies through integration of environmental, genetic, and metabolic markers

scientific article published on 22 July 2020

Proteomic analysis of detergent-solubilized membrane proteins from insect-developmental forms of Trypanosoma cruzi.

scientific article published on July 2009

Proteomics of natural bacterial isolates powered by deep learning-based de novo identification

scholarly article published 27 September 2018

QC-ART: A tool for real-time quality control assessment of mass spectrometry-based proteomics data

scientific article published on 17 April 2018

Quantitative site-specific reactivity profiling of S-nitrosylation in mouse skeletal muscle using cysteinyl peptide enrichment coupled with mass spectrometry

scientific article published on 28 December 2012

Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards.

scientific article published on 19 December 2018

Reevaluation of the coding potential and proteomic analysis of the BAC-derived rhesus cytomegalovirus strain 68-1.

scientific article

Regulation of Translation by Lysine Acetylation in Escherichia coli

scientific article published in 2022

Remodeling of the Histoplasma Capsulatum Membrane Induced by Monoclonal Antibodies

scientific article published on 02 June 2020

SUMOylation pathway in Trypanosoma cruzi: functional characterization and proteomic analysis of target proteins

scientific article published on 10 August 2011

Sexual dimorphism in the fetal cardiac response to maternal nutrient restriction

scientific article published on 19 June 2017

Sphingolipid synthesis is necessary for kinetoplast segregation and cytokinesis in Trypanosoma brucei.

scientific article published on 29 January 2008

Structural and functional analysis of a platelet-activating lysophosphatidylcholine of Trypanosoma cruzi

scientific article (publication date: August 2014)

Structure, cellular distribution, antigenicity, and biological functions of Fonsecaea pedrosoi ceramide monohexosides

scientific article

Subcellular proteomics of Trypanosoma cruzi reservosomes.

scientific article published on April 2009

Technologies and approaches to elucidate and model the virulence program of salmonella

scientific article

The Plasmodium falciparum exported protein PF3D7_0402000 binds to erythrocyte ankyrin and band 4.1.

scientific article published on 13 June 2017

The impact of proinflammatory cytokines on the β-cell regulatory landscape provides insights into the genetics of type 1 diabetes

scientific article published on 01 November 2019

The impact of proteomics on the understanding of functions and biogenesis of fungal extracellular vesicles ⬇️

scientific article published on April 10, 2013

The role of proteomics in assessing beta-cell dysfunction and death in type 1 diabetes

scientific article published on 24 June 2019

Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions.

scientific article

Transcriptional and translational landscape of <i>Candida auris</i> in response to caspofungin

scientific article published on 14 September 2021

Trypanosoma cruzi epimastigotes are able to store and mobilize high amounts of cholesterol in reservosome lipid inclusions.

scientific article

Trypanosoma cruzi histone H1 is phosphorylated in a typical cyclin dependent kinase site accordingly to the cell cycle.

scientific article published on March 2005

Ubiquitination independent of E1 and E2 enzymes by bacterial effectors

scientific journal article

Vesicle and vesicle-free extracellular proteome of Paracoccidioides brasiliensis: comparative analysis with other pathogenic fungi.

scientific article published on 14 February 2012

Vesicular transport in Histoplasma capsulatum: an effective mechanism for trans-cell wall transfer of proteins and lipids in ascomycetes

scientific article published on 17 April 2008

Wolbachia Endosymbionts Modify Drosophila Ovary Protein Levels in a Context-Dependent Manner

scientific article published on 24 June 2016

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