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List of works by Shannon L Johnson

Characterization of TEM-1 β-Lactamase-Producing Kingella kingae Clinical Isolates.

scientific article

Complete Genome Assemblies for Two Single-Chromosome Vibrio cholerae Isolates, Strains 1154-74 (Serogroup O49) and 10432-62 (Serogroup O27).

scientific article published on 14 May 2015

Complete Genome Assembly of Corynebacterium sp. Strain ATCC 6931.

scientific article

Complete Genome Assembly of Enterococcus faecalis 29212, a Laboratory Reference Strain.

scientific article

Complete Genome Assembly of Escherichia coli ATCC 25922, a Serotype O6 Reference Strain

scientific article

Complete Genome Assembly of Reference Strain Ochrobactrum anthropi ATCC 49687.

scientific article

Complete Genome Assembly of Staphylococcus epidermidis AmMS 205.

scientific article

Complete Genome Assembly of Streptococcus pyogenes ATCC 19615, a Group A β-Hemolytic Reference Strain

scientific article

Complete Genome Assembly of a Quality Control Reference Isolate, Moraxella catarrhalis Strain ATCC 25240.

scientific article

Complete Genome Sequence of Bacillus thuringiensis Serovar Israelensis Strain HD-789.

scientific article published on 26 December 2013

Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Enteritidis Strain SEJ.

scientific article

Complete Genome Sequence of Stenotrophomonas maltophilia Type Strain 810-2 (ATCC 13637).

scientific article

Complete Genome Sequence of Type Strain Pasteurella multocida subsp. multocida ATCC 43137.

scientific article

Complete Genome Sequence of the Encephalomyelitic Burkholderia pseudomallei Strain MSHR305

scientific article published on 22 August 2013

Complete Genome Sequences of Historic Clostridioides difficile Food-Dwelling Ribotype 078 Strains in Canada Identical to That of the Historic Human Clinical Strain M120 in the United Kingdom

scientific article published on 27 September 2018

Complete genome sequences for 35 biothreat assay-relevant bacillus species

scientific article

Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor

scientific article published on 30 April 2015

Correction for Johnson et al., "Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species".

scientific article published on 18 January 2018

Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor

scientific article published on 21 April 2016

Detection of Abrin-Like and Prepropulchellin-Like Toxin Genes and Transcripts Using Whole Genome Sequencing and Full-Length Transcript Sequencing of Abrus precatorius

scientific article published on 25 November 2019

Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01.

scientific article

Draft Genome Assemblies of Proteus mirabilis ATCC 7002 and Proteus vulgaris ATCC 49132

scientific article

Draft Genome Assembly of Acinetobacter baumannii ATCC 19606

scientific article

Draft Genome Assembly of Bordetella bronchiseptica ATCC 10580, a Historical Canine Clinical Isolate.

scientific article

Draft Genome Assembly of Delftia acidovorans Type Strain 2167.

scientific article

Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883

scientific article

Draft Genome Assembly of Neisseria lactamica Type Strain A7515 ⬇️

scientific article

Draft Genome Assembly of Pseudomonas aeruginosa Quality Control Reference Strain Boston 41501

scientific article

Draft Genome Assembly of Ralstonia pickettii Type Strain K-288 (ATCC 27853).

scientific article

Draft Genome Sequence of Enterobacter cloacae Strain S611

scientific article

Draft Genome Sequence of Pseudomonas putida Strain S610, a Seed-Borne Bacterium of Wheat.

scientific article published on 26 December 2013

Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets

scientific article

Draft Genome Sequence of a Mucoid Isolate of Pseudomonas aeruginosa Strain C7447m from a Patient with Cystic Fibrosis

scientific article published on 10 October 2013

Draft Genome Sequence of a Stable Mucoid Strain of Pseudomonas aeruginosa PAO581 with a mucA25 Mutation

scientific article published on 10 October 2013

Draft Genome Sequences of Two Alginate-Overproducing Variants of Pseudomonas aeruginosa, PAO1-VE2 and PAO1-VE13.

scientific article published on 12 December 2013

Draft Genomes for Eight Burkholderia mallei Isolates from Turkey.

scientific article

Draft genome sequence for Pseudomonas aeruginosa strain PAO579, a mucoid derivative of PAO381.

scientific article

Erratum for Halpin et al., "Finished Whole-Genome Sequences of Clostridium butyricum Toxin Subtype E4 and Clostridium baratii Toxin Subtype F7 Strains".

scientific article published on 21 September 2017

Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome.

scientific article published on 29 August 2017

Export of nitrogenous compounds due to incomplete cycling within biological soil crusts of arid lands.

scientific article published on March 2007

Finished Genome Assembly of Warm Spring Isolate Francisella novicida DPG 3A-IS.

scientific article

Finished Genome Assembly of Yersinia pestis EV76D and KIM 10v.

scientific article

Finished Genome Sequence of Bacillus cereus Strain 03BB87, a Clinical Isolate with B. anthracis Virulence Genes.

scientific article

Finished Whole-Genome Sequence of Clostridium argentinense Producing Botulinum Neurotoxin Type G

scientific article

Finished Whole-Genome Sequences of Clostridium butyricum Toxin Subtype E4 and Clostridium baratii Toxin Subtype F7 Strains.

scientific article published on 20 July 2017

Finished Whole-Genome Sequences of Two Clostridium botulinum Type A(B) Isolates.

scientific article

Full-Genome Assembly of Reference Strain Providencia stuartii ATCC 33672.

scientific article

Generation of a highly attenuated strain of Pseudomonas aeruginosa for commercial production of alginate

scientific article published on 21 April 2019

Genome Assemblies for 11 Yersinia pestis Strains Isolated in the Caucasus Region

scientific article

Genome Assembly of Methicillin-Resistant Quality Control Strain Staphylococcus aureus CDC73-57501 (ATCC 29247).

scientific article

Genome Assembly of Serratia marcescens Type Strain ATCC 13880.

scientific article

Genome Assembly of Shigella flexneri ATCC 12022, a Quality Control Reference Strain

scientific article

Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir.

scientific article

Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species

scientific article published on 11 June 2015

Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent

scientific article

Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.).

scientific article

Genome Sequence of a Chromium-Reducing Strain, Bacillus cereus S612

scientific article

Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6

scientific article published on 30 June 2016

Genome Sequences of Eight Bacterial Species Found in Coculture with the Haptophyte Chrysochromulina tobin.

scientific article

Genome of the cyanobacterium Microcoleus vaginatus FGP-2, a photosynthetic ecosystem engineer of arid land soil biocrusts worldwide

scientific article

Genome sequence of Kingella kingae septic arthritis isolate PYKK081.

scientific article

Genome sequencing of 18 francisella strains to aid in assay development and testing

scientific article published on 30 April 2015

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2

scientific article

Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes

scientific article

Genomic signatures of strain selection and enhancement in Bacillus atrophaeus var. globigii, a historical biowarfare simulant

scientific article published in 2011

High impact of bacterial predation on cyanobacteria in soil biocrusts

scientific article published in 2022

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

scientific article

Response of biological soil crust diazotrophs to season, altered summer precipitation, and year-round increased temperature in an arid grassland of the colorado plateau, USA.

scientific article

Scanning the landscape of genome architecture of non-O1 and non-O139 Vibrio cholerae by whole genome mapping reveals extensive population genetic diversity

scientific article

Small-scale vertical distribution of bacterial biomass and diversity in biological soil crusts from arid lands in the Colorado plateau

scientific article published on 17 September 2003

Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant

scientific article published on 26 November 2013

Ten Genome Sequences of Human and Livestock Isolates of Bacillus anthracis from the Country of Georgia.

scientific article

The evolution of a super-swarm of foot-and-mouth disease virus in cattle

scientific article published on 25 April 2019

The path to triacylglyceride obesity in the sta6 strain of Chlamydomonas reinhardtii

scientific article

Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica

scientific article published on 30 April 2015

Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas

scientific article

Twenty Whole-Genome Bacillus sp. Assemblies

scientific article

Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258 Klebsiella pneumoniae Strains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones

scientific article published on 11 June 2016

Whole-Genome Sequence of Listeria monocytogenes Type Strain 53 XXIII

scientific article

Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei

scientific article

Whole-Genome Yersinia sp. Assemblies from 10 Diverse Strains

scientific article

Whole-genome assemblies of 56 burkholderia species

scientific article

Whole-genome sequences of 24 Brucella strains.

scientific article

Whole-genome sequences of nine francisella isolates

scientific article

φX216, a P2-like bacteriophage with broad Burkholderia pseudomallei and B. mallei strain infectivity.

scientific article

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