List of works - Samuel S Minot

Admixture and recombination among Toxoplasma gondii lineages explain global genome diversity

scientific article (publication date: 14 August 2012)

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer

scientific article

Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease

scientific article published on 01 August 2019

Complete mitochondrial genomes of the human follicle mites Demodex brevis and D. folliculorum: novel gene arrangement, truncated tRNA genes, and ancient divergence between species

scientific article

Conservation of gene cassettes among diverse viruses of the human gut.

scientific article

Determining the cause of recurrent Clostridium difficile infection using whole genome sequencing

scientific article published on 5 October 2016

Evolutionary and functional implications of hypervariable loci within the skin virome.

scientific article published on 7 February 2017

Global divergence of the human follicle mite Demodex folliculorum: Persistent associations between host ancestry and mite lineages ⬇️

scientific article

Hypervariable loci in the human gut virome

scientific article published on 21 February 2012

In silico benchmarking of metagenomic tools for coding sequence detection reveals the limits of sensitivity and precision

scientific article published on 15 October 2020

RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways.

scientific article

Rapid evolution of the human gut virome

scientific article published on 08 July 2013

The human gut virome: inter-individual variation and dynamic response to diet

scientific article

The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome.

scientific article

Validation of high throughput sequencing and microbial forensics applications

scientific article

geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response

scientific article published on 05 May 2021

List of works by Samuel S Minot

Admixture and recombination among Toxoplasma gondii lineages explain global genome diversity

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer

Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease

Complete mitochondrial genomes of the human follicle mites Demodex brevis and D. folliculorum: novel gene arrangement, truncated tRNA genes, and ancient divergence between species

Conservation of gene cassettes among diverse viruses of the human gut.

Determining the cause of recurrent Clostridium difficile infection using whole genome sequencing

Evolutionary and functional implications of hypervariable loci within the skin virome.

Global divergence of the human follicle mite Demodex folliculorum: Persistent associations between host ancestry and mite lineages ⬇️

Hypervariable loci in the human gut virome

In silico benchmarking of metagenomic tools for coding sequence detection reveals the limits of sensitivity and precision

RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways.

Rapid evolution of the human gut virome

The human gut virome: inter-individual variation and dynamic response to diet

The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome.

Validation of high throughput sequencing and microbial forensics applications

geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response