Search filters

List of works by Rory J Bowden

A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples

scientific article

A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance

scientific article (publication date: 2012)

A practical solution for preserving single cells for RNA sequencing

scientific article published in February 2018

A single-cell atlas of the human substantia nigra reveals cell-specific pathways associated with neurological disorders

scientific article published on 21 August 2020

Analysis of Differentiation Protocols Defines a Common Pancreatic Progenitor Molecular Signature and Guides Refinement of Endocrine Differentiation

scientific article published on 26 December 2019

Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples.

scientific article

Cellular α-synuclein pathology is associated with bioenergetic dysfunction in Parkinson's iPSC-derived dopamine neurons.

scientific article published in June 2019

Characterization of hepatitis C virus resistance to grazoprevir reveals complex patterns of mutations following on-treatment breakthrough that are not observed at relapse

scientific article published on 08 August 2018

Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes.

scientific article published on 06 July 2016

Correction: Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples

scientific article

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

scientific article published in Nature Communications

Diverse sources of C. difficile infection identified on whole-genome sequencing

scientific article published on September 2013

Dynamics of acquisition and loss of carriage of Staphylococcus aureus strains in the community: the effect of clonal complex

scientific article published on 04 January 2014

Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis.

scientific article published on 16 April 2015

Evaluation of Viremia Frequencies of a Novel Human Pegivirus by Using Bioinformatic Screening and PCR

scientific article

Evidence for the evolutionary steps leading to mecA-mediated β-lactam resistance in staphylococci

scientific article

Evolutionary Origin of the Staphylococcal Cassette Chromosome mec (SCCmec).

scientific article published on 3 April 2017

Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease

scientific article published on 5 March 2012

Factors influencing meiotic recombination revealed by whole-genome sequencing of single sperm

scientific article published on 01 March 2019

Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus.

scientific article published on 10 April 2017

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.

scientific article published on 24 May 2018

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

scientific article published on 08 May 2019

Impact of IFNL4 genotype on Interferon-stimulated Gene Expression during DAA therapy for Hepatitis C.

scientific article published on 13 March 2018

Insights into Platypus Population Structure and History from Whole-Genome Sequencing.

scientific article published in May 2018

Interferon lambda 4 impacts the genetic diversity of hepatitis C virus

scientific article published on 03 September 2019

Lineage-specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group.

scientific article published on 6 March 2018

Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi.

scientific article published on 6 June 2018

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission

scientific article

MinION Analysis and Reference Consortium: Phase 1 data release and analysis

scientific article

Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.

scientific article

Multilocus sequence typing of Clostridium difficile

scientific article

Oxford Nanopore MinION Sequencing Enables Rapid Whole Genome Assembly of Rickettsia typhi in a Resource-Limited Setting

scientific article published on 01 February 2020

Panton-Valentine leucocidin is the key determinant of pyomyositis in a bacterial GWAS

scientific article published on 22 February 2019

Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event

scientific article published on 29 January 2012

Prevalence of Staphylococcus aureus protein A (spa) mutants in the community and hospitals in Oxfordshire

scientific article

Prolonged Zika Virus RNA Detection in Semen of Immunosuppressed Patient

scientific article published on 01 August 2019

Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus

scientific article

Recombinational switching of the Clostridium difficile S-layer and a novel glycosylation gene cluster revealed by large-scale whole-genome sequencing

scientific article published on 29 November 2012

Reproducibility of Molecular Phenotypes after Long-Term Differentiation to Human iPSC-Derived Neurons: A Multi-Site Omics Study

article

Resistance analysis of genotype 3 HCV indicates subtypes inherently resistant to NS5A inhibitors.

scientific article published on 9 February 2018

Sequencing of human genomes with nanopore technology

scientific article published on 23 April 2019

Severe infections emerge from commensal bacteria by adaptive evolution

scientific article published on 19 December 2017

Severe infections emerge from the microbiome by adaptive evolution

Single-Cell Sequencing of iPSC-Dopamine Neurons Reconstructs Disease Progression and Identifies HDAC4 as a Regulator of Parkinson Cell Phenotypes

scientific article published on 29 November 2018

Single-cell atlas of colonic CD8+ T cells in ulcerative colitis

scientific article published on 03 August 2020

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease

scientific article published on 27 September 2018

Targeted RNA sequencing enhances gene expression profiling of ultra-low input samples

scientific article published on 28 June 2020

The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq

scientific article

Transcriptomic profiling of purified patient-derived dopamine neurons identifies convergent perturbations and therapeutics for Parkinson's disease

scientific article

Transforming clinical microbiology with bacterial genome sequencing.

scientific article

Viral genome wide association study identifies novel hepatitis C virus polymorphisms associated with sofosbuvir treatment failure

scientific article published on 20 October 2021

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

scientific article published on 23 June 2015

Whole-genome sequencing shows that patient-to-patient transmission rarely accounts for acquisition of Staphylococcus aureus in an intensive care unit

scientific article published on 12 December 2013

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

scientific article

Within-host evolution of Staphylococcus aureus during asymptomatic carriage.

scientific article

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens

scientific article published on 13 October 2015

Paulina is supported by:

About Paulina

Help