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List of works by Sarah M Keating

A Profile of Today's SBML-Compatible Software

scholarly article published December 2011

A community-driven global reconstruction of human metabolism. ⬇️

scientific article

Author response: Wikidata as a knowledge graph for the life sciences

scholarly article, peer review and author response published on 24 January 2020

BioModels-15 years of sharing computational models in life science

scientific article published on 01 January 2020

BioModels: Content, Features, Functionality, and Use

scientific article

BioModels: ten-year anniversary

scientific article

Controlled vocabularies and semantics in systems biology

scientific article (publication date: 25 October 2011)

Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0.

scientific article published on 01 March 2019

Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project

scientific article

JSBML: a flexible and entirely Java-based library for working with SBML

LibSBML: an API library for SBML.

scientific article

MOCCASIN: converting MATLAB ODE models to SBML.

scientific article published on 9 February 2016

Methods for simulating the dynamics of complex biological processes

scientific article published in January 2008

Path2Models: large-scale generation of computational models from biochemical pathway maps

scientific article

SBML Level 3 Package Proposal: Annotation

SBML Level 3 package: Qualitative Models, Version 1, Release 1.

scientific article published in June 2015

SBML Level 3 package: Render, Version 1, Release 1

SBML Level 3: an extensible format for the exchange and reuse of biological models

scientific article published on 01 August 2020

SBML Models and MathSBML

SBML Team facilities & software

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

scientific article

SBMLToolbox: an SBML toolbox for MATLAB users

scientific article published on 30 March 2006

Software Infrastructure for Effective Communication and Reuse of Computational Models

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.

scientific article published on 29 March 2018

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

scientific article published on 13 July 2019

Specifications of standards in systems and synthetic biology: status and developments in 2020

scientific article published on 29 June 2020

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022

scientific article published in March 2023

Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024

Supporting SBML as a model exchange format in software applications

scientific article

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

scientific article

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions

Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1

scientific article published on 04 August 2020

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2

scientific article published on 06 July 2020

The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.

scientific article published on 04 September 2015

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

scientific article

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2

scientific article published on 20 June 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.

scientific article published on 9 March 2018

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)

scientific article published on 29 June 2020

Wikidata as a FAIR knowledge graph for the life sciences

scholarly article posted as a preprint in BioRxiv on 11 February 2020

Wikidata as a knowledge graph for the life sciences ⬇️

scientific article published on 17 March 2020

libSBML New conversion API

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