Search filters

List of works by Catherine Etchebest

"Pinning strategy": a novel approach for predicting the backbone structure in terms of protein blocks from sequence.

scientific article

A new approach to the rapid determination of protein side chain conformations

scientific article published in June 1991

A new prediction strategy for long local protein structures using an original description

scientific article

A reduced amino acid alphabet for understanding and designing protein adaptation to mutation.

scientific article published on 13 June 2007

A short survey on protein blocks.

scientific article

A structural model of a seven-transmembrane helix receptor: the Duffy antigen/receptor for chemokine (DARC).

scientific article published in August 2005

Aminopeptidase B, a glucagon-processing enzyme: site directed mutagenesis of the Zn2+-binding motif and molecular modelling

scientific article

Amphipathic lipid packing sensor motifs: probing bilayer defects with hydrophobic residues

scientific article

Amphipathic-Lipid-Packing-Sensor interactions with lipids assessed by atomistic molecular dynamics

scientific article published on 12 May 2011

An Isozyme-specific Redox Switch in Human Brain Glycogen Phosphorylase Modulates Its Allosteric Activation by AMP.

scientific article

Antioxidant and Membrane Binding Properties of Serotonin Protect Lipids from Oxidation

scientific article

Cloning and modeling of CD8 beta in the amphibian ambystoma Mexicanum. Evolutionary conserved structures for interactions with major histocompatibility complex (MHC) class I molecules.

scientific article

Clustering of protein domains for functional and evolutionary studies

scientific article

Comparison of three algorithms for the assignment of secondary structure in proteins: the advantages of a consensus assignment.

scientific article published in June 1993

Conformational and helicoidal analysis of the molecular dynamics of proteins: "curves," dials and windows for a 50 psec dynamic trajectory of BPTI

scientific article published on 01 January 1990

Construction and validation of an atomic model for bacterial TSPO from electron microscopy density, evolutionary constraints, and biochemical and biophysical data.

scientific article

Critical review of general guidelines for membrane proteins model building and analysis.

scientific article published on January 2010

Decoding the structural events in substrate-gating mechanism of eukaryotic prolyl oligopeptidase using normal mode analysis and molecular dynamics simulations

scientific article published on 06 February 2014

Describing protein structure: a general algorithm yielding complete helicoidal parameters and a unique overall axis.

scientific article

Dynamical properties of the MscL of Escherichia coli: a normal mode analysis

scientific article published on September 2003

Dynamics and deformability of α-, 310- and π-helices

article

Energetic and molecular water permeation mechanisms of the human red blood cell urea transporter B

scientific article

Energy profile of Cs+ in gramicidin A in the presence of water. Problem of the ion selectivity of the channel

scientific article published in April 1988

Experimental and theoretical study of gramicidin P, an analog of gramicidin A with a methylamine C-terminal

scientific article published on 01 May 1987

Extension of a local backbone description using a structural alphabet: a new approach to the sequence-structure relationship.

scientific article

Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata.

scientific article published on 24 November 2008

Hydrophobic neighboring homology (HNH) dotplot: an approach for assessing structurally similar motifs in proteins

scientific article published on December 1994

In silico studies on DARC.

scientific article

Influence of assignment on the prediction of transmembrane helices in protein structures

scientific article published on 28 March 2010

Insights into Brain Glycogen Metabolism: THE STRUCTURE OF HUMAN BRAIN GLYCOGEN PHOSPHORYLASE.

scientific article published on 8 July 2016

Insights into the ZIKV NS1 Virology from Different Strains through a Fine Analysis of Physicochemical Properties

scientific article published on 29 November 2018

Mg2+ in the major groove modulates B-DNA structure and dynamics

scientific article

Molecular Modeling of Transporters: From Low Resolution Cryo-Electron Microscopy Map to Conformational Exploration. The Example of TSPO.

scientific article

Multiple interests in structural models of DARC transmembrane protein.

scientific article published on 23 July 2010

Mutation in the substrate-binding site of aminopeptidase B confers new enzymatic properties.

scientific article published on 13 January 2011

NS1 from Two Zika Virus Strains Differently Interact with a Membrane: Insights to Understand Their Differential Virulence

scientific article published in 2023

New insights into GluT1 mechanics during glucose transfer

scientific article published in Scientific Reports

New insights of membrane environment effects on MscL channel mechanics from theoretical approaches.

scientific article published on May 2008

On the orientation of a designed transmembrane peptide: toward the right tilt angle?

scientific article published on 15 November 2007

Predicting protein flexibility through the prediction of local structures

scientific article

Prediction of the positioning of the seven transmembrane alpha-helices of bacteriorhodopsin. A molecular simulation study

scientific article published on 01 March 1994

PredyFlexy: flexibility and local structure prediction from sequence.

scientific article

Protein flexibility in the light of structural alphabets

scientific article

Repository of Enriched Structures of Proteins Involved in the Red Blood Cell Environment (RESPIRE)

scientific article published on 22 February 2019

Rotational orientation of transmembrane alpha-helices in bacteriorhodopsin. A neutron diffraction study

scientific article published on 01 March 1994

Sequence-structure relationship study in all-α transmembrane proteins using an unsupervised learning approach.

scientific article

Structure and dynamics of bacteriorhodopsin. Comparison of simulation and experiment.

scientific article

TMPL: a database of experimental and theoretical transmembrane protein models positioned in the lipid bilayer.

scientific article

Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes

scientific article published on 01 November 2008

The C Terminus of Rotavirus VP4 Protein Contains an Actin Binding Domain Which Requires Cooperation with the Coiled-Coil Domain for Actin Remodeling.

scientific article published on 10 December 2018

The effect of the amino-acid side chains on the energy profiles for ion transport in the gramicidin A channel

scientific article published on 01 February 1985

The gramicidin A channel: comparison of the energy profiles of Na+ , K+ and Cs+

scientific article published on 01 August 1984

The gramicidin A channel: energetics and structural characteristics of the progression of a sodium ion in the presence of water

scientific article published on 01 February 1986

The gramicidin A channel: theoretical energy profile computed for single occupancy by a divalent cation, Ca2+

The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins.

scientific article

Theoretical model of human apolipoprotein B100 tertiary structure

scientific article published on 01 February 2007

Paulina is supported by:

About Paulina

Help