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List of works by Richard C Hamelin

A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors inMelampsora larici-populina(Poplar Leaf Rust)

article

A Multi-Species TaqMan PCR Assay for the Identification of Asian Gypsy Moths (Lymantria spp.) and Other Invasive Lymantriines of Biosecurity Concern to North America ⬇️

scientific article

A comparative study of genetic diversity of populations of Nectria galligena and N. coccinea var. faginata in North America

scientific article published in 2002

A sensitive real-time PCR assay for the detection of the two Melampsora medusae formae speciales on infected poplar leaves

A spruce defensin showing strong antifungal activity and increased transcript accumulation after wounding and jasmonate treatments

Adaptation of poplar leaf rust to Eastern cottonwood

Advancing Knowledge on Biology of Rust Fungi Through Genomics

article by Sébastien Duplessis et al published 2014 in Advances in Botanical Research

Alteration of soil rhizosphere communities following genetic transformation of white spruce

scientific article published on 27 April 2007

Anthropogenic signature in the incidence and distribution of an emerging pathogen of poplars

article published in 2016

Approaches to molecular characterization of fungal biocontrol agents: some case studies

Asexual propagation of a virulent clone complex in a human and feline outbreak of sporotrichosis.

scientific article

Assessing the potential of genotyping-by-sequencing-derived single nucleotide polymorphisms to identify the geographic origins of intercepted gypsy moth (Lymantria dispar ) specimens: A proof-of-concept study

article by Sandrine Picq et al published 29 October 2017 in Evolutionary Applications

Association analysis identifies Melampsora ×columbiana poplar leaf rust resistance SNPs

scientific article

Association genetics, geography and ecophysiology link stomatal patterning in Populus trichocarpa with carbon gain and disease resistance trade-offs

scientific article published on 8 November 2014

Attributes and congruence of three molecular data sets: inferring phylogenies among Septoria-related species from woody perennial plants

scientific article

Barrier to Gene Flow Between Eastern and Western Populations of Cronartium ribicola in North America

article

Biosurveillance of forest insects: part II—adoption of genomic tools by end user communities and barriers to integration

Characterization of microsatellite loci in the fungus,Grosmannia clavigera, a pine pathogen associated with the mountain pine beetle

scientific article published on 05 May 2009

Colonization history, host distribution, anthropogenic influence and landscape features shape populations of white pine blister rust, an invasive alien tree pathogen ⬇️

scientific article published on 26 May 2015

Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control

scientific article

Comparative analysis of mitochondrial genomes of geographic variants of the gypsy moth, Lymantria dispar, reveals a previously undescribed genotypic entity.

scientific article published on 27 October 2017

Comparative analysis of secreted protein evolution using expressed sequence tags from four poplar leaf rusts (Melampsora spp.).

scientific article

Comparison of RAPD technique and somatic incompatibility tests for the identification of Phlebiopsis gigantea strains

scientific article published in 1997

Contributions of genomics to forest pathology

scholarly article by Richard C Hamelin published January 2012 in Canadian Journal of Plant Pathology

Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

scientific article

Correction: Spatial Genetic Structure of a Symbiotic Beetle-Fungal System: Toward Multi-Taxa Integrated Landscape Genetics

scientific article published on 25 October 2013

Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry

scientific article published on 22 December 2015

Current state of genetically modified plant impact on target and non-target fungi

article

DNA barcoding in the rust genus Chrysomyxa and its implications for the phylogeny of the genus

scientific article published on 9 June 2011

DNA polymorphism and molecular diagnosis inInonotusspp

article published in 2002

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data

scientific article

Development of a multiplex immunocapture RT-PCR assay for detection and differentiation of tomato and tobacco mosaic tobamoviruses.

scientific article published in October 1998

Differentiation of European and North American genotypes ofPhytophthora ramorumby real-time polymerase chain reaction primer extension

Direct genotyping of the poplar leaf rust fungus, Melampsora medusae f. sp. deltoidae, using codominant PCR-SSCP markers

Discrimination between alfalfa and potato isolates of Verticillium albo-atrum using RAPD markers

article by Tharcisse Barasubiye et al published December 1995 in Mycological Research

Distinct patterns of KRAS mutations in colorectal carcinomas according to germline mismatch repair defects and hMLH1 methylation status

scientific article published on 4 August 2004

Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi

scientific article published on 6 December 2012

Duplications and losses in gene families of rust pathogens highlight putative effectors

scientific article

Effects of transgenic hybrid aspen overexpressing polyphenol oxidase on rhizosphere diversity

scientific article

Evaluation of mitochondrial genes as DNA barcode for Basidiomycota

scientific article published in May 2009

Evaluation of molecular markers for Phytophthora ramorum detection and identification: testing for specificity using a standardized library of isolates

scientific article

Evolutionary Quantitative Genomics of Populus trichocarpa

scientific article published on 23 November 2015

Extensive functional pleiotropy of REVOLUTA substantiated through forward genetics

scientific article published on 5 December 2013

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

scientific article

Fine-level genetic structure of white pine blister rust populations

scientific article published in November 1998

Fingerprinting techniques as tools towards molecular quality control of Pseudozyma flocculosa

scientific article published on 01 March 2005

First Report of Amylostereum areolatum, the Fungal Symbiont of Sirex noctilio, on Pinus spp. in Canada

article

Functional categorization of unique expressed sequence tags obtained from the yeast-like growth phase of the elm pathogen Ophiostoma novo-ulmi

scientific article

Fungal diversity, dominance, and community structure in the rhizosphere of clonal Picea mariana plants throughout nursery production chronosequences

scientific article

Fungal pathogen (mis-) identifications: a case study with DNA barcodes on Melampsora rusts of aspen and white poplar

scientific article published on 26 February 2009

Gene genealogies reveal cryptic species and host preferences for the pine fungal pathogen Grosmannia clavigera

scientific article

Genetic Diversity Between and Within Cankers of the White Pine Blister Rust

article by Richard C Hamelin published 1996 in Phytopathology

Genetic Diversity and the Presence of Two Distinct Groups inOphiostoma clavigerumAssociated withDendroctonus ponderosaein British Columbia and the Northern Rocky Mountains

article published in 2007

Genetic Diversity in Poplar Leaf Rust (Melampsora medusae f. sp. deltoidae) in the Zones of Host Sympatry and Allopatry

scientific article published in May 2007

Genetic Resistance to Fusiform Rust in Southern Pines and White Pine Blister Rust in White Pines—A Contrasting Tale of Two Rust Pathosystems—Current Status and Future Prospects

article by Richard Sniezko et al published 1 September 2014 in Forests

Genetic Structure of Cronartium ribicola Populations in Eastern Canada

article

Genetic Structure of Mycosphaerella populorum (Anamorph Septoria musiva) Populations in North-Central and Northeastern North America

scientific article published in June 2005

Genetic Variability of Canadian Populations of the Sapstain FungusOphiostoma piceae

article

Genetic and genomic evidence of niche partitioning and adaptive radiation in mountain pine beetle fungal symbionts.

scientific article

Genetic differentiation within the European race of Gremmeniella abietina

scientific article published in 1996

Genetic diversity in Cronartium quercuum f.sp. fusiforme on loblolly pines in southern U.S

article

Genetic diversity in populations of Cronartium ribicola in plantations and natural stands of Pinus strobus

scientific article published on 01 December 1995

Genetic diversity of Phytophthora pluvialis , a pathogen of conifers, in New Zealand and the west coast of the United States of America

article

Genetic patterns reveal historical and contemporary dispersal of a tree pathogen

Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen

scientific article

Genome-Enhanced Detection and Identification (GEDI) of plant pathogens.

scientific article published on 22 February 2018

Genomic biosurveillance detects a sexual hybrid in the sudden oak death pathogen

scientific article published on 19 May 2022

Genomic biosurveillance of forest invasive alien enemies: A story written in code ⬇️

scientific article published on 10 September 2019

Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen

scientific article

Hybridization and introgression drive genome evolution of Dutch elm disease pathogens

scientific article published on 02 March 2020

Hybridization between two biotypes of Gremmeniella abietina var. abietina in artificial pairings

Identification of mycobacteria in peat moss processing plants: application of molecular biology approaches

article

Impact of an 8-year-old transgenic poplar plantation on the ectomycorrhizal fungal community

scientific article

Impact of endochitinase-transformed white spruce on soil fungal biomass and ectendomycorrhizal symbiosis

scientific article

Impact of endochitinase-transformed white spruce on soil fungal communities under greenhouse conditions

scientific article published on 26 January 2011

In Situ Processing and Efficient Environmental Detection (iSPEED) of tree pests and pathogens using point-of-use real-time PCR

scientific article published on 02 April 2020

In vitro toxicity of natural and designed peptides to tree pathogens and pollen

article

In vivo monitoring of obligate biotrophic pathogen growth by kinetic PCR.

scientific article

Influence of leaf wetness, temperature, and rain on poplar leaf rust epidemics

Mixed lineage kinase 3 gene mutations in mismatch repair deficient gastrointestinal tumours

scientific article

Molecular Detection of 10 of the Most Unwanted Alien Forest Pathogens in Canada Using Real-Time PCR.

scientific article

Molecular Detection of Phytophthora ramorum by Real-Time Polymerase Chain Reaction Using TaqMan, SYBR Green, and Molecular Beacons

scientific article published in May 2007

Molecular Epidemiology of White Pine Blister Rust: Recombination and Spatial Distribution

scholarly article by Richard C Hamelin et al published July 2005 in Phytopathology

Molecular Evidence of Distinct Introductions of the European Race of Gremmeniella abietina into North America

scientific article published in June 1998

Molecular and Physiological Analysis of the Powdery Mildew Antagonist Pseudozyma flocculosa and Related Fungi.

scientific article published in March 2001

Molecular assays to detect the presence and viability of Phytophthora ramorum and Grosmannia clavigera

scientific article published on 05 February 2020

Molecular epidemiology of forest pathogens: from genes to landscape

article

Molecular profiling of rhizosphere microbial communities associated with healthy and diseased black spruce (Picea mariana) seedlings grown in a nursery

scientific article

Morchella tomentosa: a unique belowground structure and a new clade of morels

scientific article

Multiplex real-time polymerase chain reaction (PCR) for detection ofPhytophthora ramorum, the causal agent of sudden oak death

article published in 2009

Neofusicoccum arbuti: a hidden threat toArbutus menziesiicharacterized by widespread latent infections and a broad host range

No evidence of an impact on the rhizosphere diazotroph community by the expression of Bacillus thuringiensis Cry1Ab toxin by Bt white spruce

scientific article

Nucleotide polymorphisms in three genes support host and geographic speciation in tree pathogens belonging to Gremmeniella spp

article

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

scientific article

Optimization of a real-time PCR assay for the detection of the quarantine pathogen Melampsora medusae f. sp. deltoidae

scientific article

PCR detection of Gremmeniella abietina, the causal agent of Scleroderris canker of pine

scientific article published in 2000

Patterns of colonization and spread in the fungal spruce pathogen Onnia tomentosa

scientific article published on 5 October 2009

Phylogenetic species recognition reveals host-specific lineages among poplar rust fungi

scientific article published on 10 November 2012

Phylogenetics of Helotiales and Rhytismatales Based on Partial Small Subunit Nuclear Ribosomal DNA Sequences

scholarly article by David S. Gernandt et al published September 2001 in Mycologia

Phylogeny of Gremmeniella spp. based on sequences of the 5.8S rDNA and internal transcribed spacer region

scholarly article by Richard C Hamelin & Jimmy Rail published May 1997 in Canadian Journal of Botany

Poplar leaf rusts: model pathogens for a model treeThis minireview is one of a selection of papers published in the Special Issue on Poplar Research in Canada

article

Poplar rust systematics and refinement of Melampsora species delineation

article

Population structure and migration pattern of a conifer pathogen, Grosmannia clavigera, as influenced by its symbiont, the mountain pine beetle

scientific article published on 25 November 2011

Population structure of mountain pine beetle symbiont Leptographium longiclavatum and the implication on the multipartite beetle-fungi relationships

scientific article

Prediction of poplar leaf rust epidemics from a leaf-disk assay

Putative origin of clonal lineages of Amylostereum areolatum, the fungal symbiont associated with Sirex noctilio, retrieved from Pinus sylvestris, in eastern Canada

scientific article published on 7 June 2011

Rapid identification and detection of pine pathogenic fungi associated with mountain pine beetles by padlock probes.

scientific article

Real-time PCR assay to distinguishPhytophthora ramorumlineages using the cellulose binding elicitor lectin (CBEL) locus

Real-time PCR assays for the detection ofHeterobasidion irregulare,H. occidentale, H. annosumsensu stricto and theHeterobasidion annosumcomplex

Real-time PCR detection and discrimination of the Ceratocystis coerulescens complex and of the fungal species from the Ceratocystis polonica complex validated on pure cultures and bark beetle vectors

article

Recent advances related to poplar leaf spot and canker caused bySeptoria musiva

Say hello to my little friends: how microbiota can modulate tree health

article

Sequence-tagged sites (STS) for studies of molecular epidemiology of scleroderris canker of conifers

article published in 1998

Sexual homomorphism in dioecious trees: extensive tests fail to detect sexual dimorphism in Populus †

scientific article

Simultaneous monitoring and quantification ofMelampsora allii-populinaandMelampsora larici-populinaon infected poplar leaves using a duplex real-time PCR assay

Single-nucleotide polymorphism discovery in Leptographium longiclavatum, a mountain pine beetle-associated symbiotic fungus, using whole-genome resequencing

scientific article

Spatial genetic structure of a symbiotic beetle-fungal system: toward multi-taxa integrated landscape genetics

scientific article

Standardizing the nomenclature for clonal lineages of the sudden oak death pathogen, Phytophthora ramorum

scientific article published in July 2009

Structural changes of spores of tree fungal pathogens after treatment with the designed antimicrobial peptide D2A21

scientific article published in 2000

Target-specific PCR primers can detect and differentiate ophiostomatoid fungi from microbial communities associated with the mountain pine beetle Dendroctonus ponderosae ⬇️

scientific article published on August 7, 2010

The MAT1-1:MAT1-2 ratio of Sporothrix globosa isolates in Japan

scientific article published on 18 September 2014

The effects of high-tannin leaf litter from transgenic poplars on microbial communities in microcosm soils

scientific article published on 26 September 2013

The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry

scientific article

The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola

scientific article published on 17 December 2014

Unequal recombination and evolution of the mating-type (MAT) loci in the pathogenic fungus Grosmannia clavigera and relatives

scientific article published on March 2013

Variability of Nuclear SSU-rDNA Group Introns Within Septoria Species: Incongruence with Host Sequence Phylogenies

article

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