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List of works by Samantha J Lycett

A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland

scientific article published on 19 September 2016

A brief history of bird flu

scientific article published on 01 June 2019

A guide to machine learning for bacterial host attribution using genome sequence data

scientific article published on 01 December 2019

An advantage of chaotic neural dynamics

article

Analysis of bovine viral diarrhoea virus: Biobank and sequence database to support eradication in Scotland.

scientific article

Assessing the Epidemic Potential of RNA and DNA Viruses

scientific article (publication date: December 2016)

Automated analysis of phylogenetic clusters

scientific article

Bones hold the key to DNA virus history and epidemiology

scientific article

Broadwick: a framework for computational epidemiology

scientific article published on 4 February 2016

Combining genomics and epidemiology to analyse bi-directional transmission of in a multi-host system

scientific article published on 17 December 2019

Determining the phylogenetic and phylogeographic origin of highly pathogenic avian influenza (H7N3) in Mexico.

scientific article

Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2

scientific article

Estimating the rate of intersubtype recombination in early HIV-1 group M strains

scientific article published on 12 December 2012

Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza.

scientific article

Evolutionary origins of epidemic potential among human RNA viruses

scientific article published on 18 September 2019

Fast Dating Using Least-Squares Criteria and Algorithms

scientific article (publication date: 2016)

Gene exchange drives the ecological success of a multi-host bacterial pathogen

article

Genesis and spread of multiple reassortants during the 2016/2017 H5 avian influenza epidemic in Eurasia

scientific article published on 07 August 2020

Integrating animal movements with phylogeography to model the spread of PRRSV in the USA

scientific article published on 15 July 2021

Investigation of influenza virus polymerase activity in pig cells

scientific article published on 17 October 2012

Modelling the impact of co-circulating low pathogenic avian influenza viruses on epidemics of highly pathogenic avian influenza in poultry

scientific article

Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom

scientific article

Origin and fate of A/H1N1 influenza in Scotland during 2009

scientific article

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

scientific article (publication date: 25 June 2009)

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

scientific article published on 07 October 2016

Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions

scientific article

Phylogeographic analysis and identification of factors impacting the diffusion of Foot-and-Mouth disease virus in Africa

article

Predicting vaccine effectiveness in livestock populations: A theoretical framework applied to PRRS virus infections in pigs

scientific article published on 30 August 2019

Quantifying predictors for the spatial diffusion of avian influenza virus in China

scientific article

Reassortment between influenza B lineages and the emergence of a coadapted PB1-PB2-HA gene complex

scientific article

Reassortment patterns of avian influenza virus internal segments among different subtypes.

scientific article published on 24 January 2014

Role of the B Allele of Influenza A Virus Segment 8 in Setting Mammalian Host Range and Pathogenicity

scientific article

Supersize me: how whole-genome sequencing and big data are transforming epidemiology

scientific article

The effect of the PB2 mutation 627K on highly pathogenic H5N1 avian influenza virus is dependent on the virus lineage.

scientific article published on 10 July 2013

The evolution and phylodynamics of serotype A and SAT2 foot-and-mouth disease viruses in endemic regions of Africa

scientific article published on 04 April 2019

The evolutionary dynamics of influenza A virus adaptation to mammalian hosts.

scientific article published on 04 February 2013

The genesis and source of the H7N9 influenza viruses causing human infections in China

scientific article

The short stalk length of highly pathogenic avian influenza H5N1 virus neuraminidase limits transmission of pandemic H1N1 virus in ferrets

scientific article

Transmission network parameters estimated from HIV sequences for a nationwide epidemic

scientific article

Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters

scientific article published on 23 December 2015

Use of bacterial whole-genome sequencing to investigate local persistence and spread in bovine tuberculosis

scientific article

Using whole genome sequencing to investigate transmission in a multi-host system: bovine tuberculosis in New Zealand

scientific article

What are SARS-CoV-2 genomes from the WHO Africa region member states telling us?

scientific article published on 01 January 2021

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