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List of works by Jon Timmis

A Petri net model of granulomatous inflammation: implications for IL-10 mediated control of Leishmania donovani infection

scientific article

ASPASIA: A toolkit for evaluating the effects of biological interventions on SBML model behaviour.

scientific article

Agent-Based Modeling in Systems Pharmacology

scientific article

Alignment-Independent Techniques for Protein Classification

An Immune Algorithm for Protein Structure Prediction on Lattice Models

scientific article published in February 2007

An artificial immune system for data analysis.

scientific article

An immune network inspired evolutionary algorithm for the diagnosis of Parkinson's disease

scientific article published on 20 June 2008

An immune-inspired swarm aggregation algorithm for self-healing swarm robotic systems.

scientific article published on 10 May 2016

Automated multi-objective calibration of biological agent-based simulations.

scientific article published on September 2016

Building confidence in quantitative systems pharmacology models: An engineer's guide to exploring the rationale in model design and development

scientific article

CoCoRo -- The Self-Aware Underwater Swarm

Correction: Determining disease intervention strategies using spatially resolved simulations ⬇️

scientific article published on 8 May 2015

Correction: Spartan: A Comprehensive Tool for Understanding Uncertainty in Simulations of Biological Systems

Determining disease intervention strategies using spatially resolved simulations

scientific article (publication date: 2013)

Differential RET signaling pathways drive development of the enteric lymphoid and nervous systems

scientific article

Elucidation of T cell signalling models

scientific article published on 13 October 2009

Erratum to: NACO special issue editorial

scholarly article published in Natural Computing

Extending and Applying Spartan to Perform Temporal Sensitivity Analyses for Predicting Changes in Influential Biological Pathways in Computational Models.

scientific article published on 11 February 2016

GPCRTree: online hierarchical classification of GPCR function

scientific article

Generic, scalable and decentralized fault detection for robot swarms.

scientific article published on 14 August 2017

Hierarchical classification of G-protein-coupled receptors with data-driven selection of attributes and classifiers

scientific article

Imaging Immunity in Lymph Nodes: Past, Present and Future

scientific article published on January 2016

Immune-Inspired Adaptable Error Detection for Automated Teller Machines

scientific article published in September 2007

In silico investigation into dendritic cell regulation of CD8Treg mediated killing of Th1 cells in murine experimental autoimmune encephalomyelitis

scientific article

In silico investigation of novel biological pathways: The role of CD200 in regulation of T cell priming in experimental autoimmune encephalomyelitis

scientific article published on 07 March 2013

Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection

scientific article

Livestock Disease Management for Trading Across Different Regulatory Regimes.

scientific article published on 12 February 2018

Methodologies for Quantitative Systems Pharmacology (QSP) Models: Design and Estimation

scientific article published on 6 June 2017

Model-Driven Experimentation: A New Approach to Understand Mechanisms of Tertiary Lymphoid Tissue Formation, Function, and Therapeutic Resolution.

scientific article published on January 2016

Modelling biological behaviours with the unified modelling language: an immunological case study and critique.

scientific article

Modelling the impact and control of an infectious disease in a plant nursery with infected plant material inputs ⬇️

scientific article published on August 2016

Nominal-Yield-Area Tradeoff in Automatic Synthesis of Analog Circuits: A Genetic Programming Approach Using Immune-Inspired Operators

article published in 2009

On Adaptive Self-Organization in Artificial Robot Organisms

On Diversity and Artificial Immune Systems: Incorporating a Diversity Operator into aiNet

scientific article published in 2006

On artificial immune systems and swarm intelligence

scientific article published on 23 September 2010

On the hierarchical classification of G protein-coupled receptors

scientific article published on 22 October 2007

Optimizing amino acid groupings for GPCR classification

scientific article published in August 2008

Pairing experimentation and computational modeling to understand the role of tissue inducer cells in the development of lymphoid organs.

scientific article published on 18 July 2012

Present perspectives on the automated classification of the G-protein coupled receptors (GPCRs) at the protein sequence level

scientific article published on January 2011

Proteomic applications of automated GPCR classification

scientific article published on August 2007

Spartan: a comprehensive tool for understanding uncertainty in simulations of biological systems

scientific article

Statistical Techniques Complement UML When Developing Domain Models of Complex Dynamical Biosystems.

scientific article

Suppression of AGO2 by miR-132 as a determinant of miRNA-mediated silencing in human primary endothelial cells

scientific article

The rise in computational systems biology approaches for understanding NF-κB signaling dynamics

article

Using argument notation to engineer biological simulations with increased confidence.

scientific article published on March 2015

Utilising a simulation platform to understand the effect of domain model assumptions

scientific article published on January 2015

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