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List of works by Carsten T Kuenne

ADMIRE: analysis and visualization of differential methylation in genomic regions using the Infinium HumanMethylation450 Assay

scientific article published on December 2015

ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation

scientific article published on 26 August 2020

Age-dependent increase of oxidative stress regulates microRNA-29 family preserving cardiac health.

scientific article published on 4 December 2017

Aging Triggers H3K27 Trimethylation Hoarding in the Chromatin of Nothobranchius furzeri Skeletal Muscle

scientific article published on 28 September 2019

Comparative analysis of plasmids in the genus Listeria

scientific article

Comparative genome-wide analysis of small RNAs of major Gram-positive pathogens: from identification to application

scientific article

Comparative genomic analysis for the presence of potential enterococcal virulence factors in the probiotic Enterococcus faecalis strain Symbioflor 1

scientific article published on 27 April 2007

Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes

scientific article

Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431.

scientific article published on January 2013

Complete genome sequence of Listeria seeligeri, a nonpathogenic member of the genus Listeria

scientific article published on 8 January 2010

Complete genome sequence of the porcine isolate Enterococcus faecalis D32.

scientific article

GECO--linear visualization for comparative genomics.

scientific article published on 31 October 2006

Genetic compensation is triggered by mutant mRNA degradation

article published in 2018

Genetic compensation triggered by mutant mRNA degradation

scientific article published on 03 April 2019

Genome-wide identification of small RNAs in the opportunistic pathogen Enterococcus faecalis V583

scientific article (publication date: 2011)

Genome-wide strategies reveal target genes of Npas4l associated with vascular development in zebrafish

scientific article published on 03 June 2019

Highly specific and quick detection of Mycobacterium avium subsp. paratuberculosis in feces and gut tissue of cattle and humans by multiple real-time PCR assays

scientific article

Identification of the orphan gene Prod 1 in basal and other salamander families

scientific article

Induction of interferon-stimulated genes and cellular stress pathways by morpholinos in zebrafish

scientific article published on 12 June 2019

Intracellular gene expression profile of Listeria monocytogenes

scientific article published on February 2006

LimiTT: link miRNAs to targets

scientific article

Loss of pyruvate kinase M2 limits growth and triggers innate immune signaling in endothelial cells

scientific article published in Nature Communications

Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in zebrafish

scientific article published on 20 November 2018

MIRPIPE: quantification of microRNAs in niche model organisms

scientific article

Pathogenomics of Listeria spp.

scientific article

Pioneering function of Isl1 in the epigenetic control of cardiomyocyte cell fate

scientific article published on 25 April 2019

RNA-Seq analysis of isolated satellite cells in Prmt5 deficient mice.

scientific article published on 3 June 2015

Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome

scientific article

Reciprocal analyses in zebrafish and medaka reveal that harnessing the immune response promotes cardiac regeneration

scientific article

Reprogramming of tumor-associated macrophages by targeting β-catenin/FOSL2/ARID5A signaling: A potential treatment of lung cancer

scientific article published on 05 June 2020

Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement

scientific article published in Nature Communications

Stable Oxidative Cytosine Modifications Accumulate in Cardiac Mesenchymal Cells from Type2 Diabetes Patients: Rescue by Alpha-Ketoglutarate and TET-TDG Functional Reactivation.

scientific article published on 20 November 2017

TGF-β Signaling Promotes Tissue Formation during Cardiac Valve Regeneration in Adult Zebrafish

scientific article published on 27 November 2019

Temporal transcriptomic analysis of the Listeria monocytogenes EGD-e sigmaB regulon

scientific article

The NADPH organizers NoxO1 and p47phox are both mediators of diabetes-induced vascular dysfunction in mice

scientific article

The flow responsive transcription factor Klf2 is required for myocardial wall integrity by modulating Fgf signaling

scientific article published on 28 December 2018

The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages

scientific article

UROPA GUI: A web platform for genomic region annotation

UROPA: a tool for Universal RObust Peak Annotation

scientific article

WIlsON: Web-based Interactive Omics VisualizatioN.

scientific article published in March 2019

Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes

scientific article published on 25 August 2006

Zeb1-Hdac2-eNOS circuitry identifies early cardiovascular precursors in naive mouse embryonic stem cells.

scientific article published on 29 March 2018

multicrispr: gRNA design for prime editing and parallel targeting of thousands of targets

scientific article published on 09 September 2020

sRNAdb: a small non-coding RNA database for gram-positive bacteria

scientific article

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