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List of works by Corinne Da Silva

454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction.

scientific article published on June 2011

A Plasmodium falciparum FcB1-schizont-EST collection providing clues to schizont specific gene structure and polymorphism

scientific article

A de novo approach to disentangle partner identity and function in holobiont systems.

scientific article

A global ocean atlas of eukaryotic genes.

scientific article published on 25 January 2018

A holistic approach to marine eco-systems biology

scientific article

Against All Odds: Trehalose-6-Phosphate Synthase and Trehalase Genes in the Bdelloid Rotifer Adineta vaga Were Acquired by Horizontal Gene Transfer and Are Upregulated during Desiccation

scientific article published on 10 July 2015

Analyses of the Root-Knot Nematode (Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants

scientific article published on 08 August 2020

Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network

scientific article published on 6 April 2018

Annotating genomes with massive-scale RNA sequencing

scientific article

Are Hox genes ancestrally involved in axial patterning? Evidence from the hydrozoan Clytia hemisphaerica (Cnidaria).

scientific article

Arsenic hypertolerance in the protist Euglena mutabilis is mediated by specific transporters and functional integrity maintenance mechanisms

scientific article published on 28 April 2014

Characterization and repeat analysis of the compact genome of the freshwater pufferfish Tetraodon nigroviridis

scientific article

Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Strains

article

Comparative assessment of long-read error-correction software applied to RNA-sequencing data:

Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data

scientific article

Construction and characterization of a BAC library for functional genomics in Xenopus tropicalis

scientific article

Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes

scientific article

Convergent Evolution of Endosymbiont Differentiation in Dalbergioid and Inverted Repeat-Lacking Clade Legumes Mediated by Nodule-Specific Cysteine-Rich Peptides

scientific article published on 18 August 2015

Convergent origins and rapid evolution of spliced leader trans-splicing in metazoa: insights from the ctenophora and hydrozoa

scientific article

De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing

De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes

scientific article

Deciphering metatranscriptomic data

scientific article

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

scientific article

Deep RNA sequencing improved the structural annotation of the Tuber melanosporum transcriptome.

scientific article

Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts

scientific article

Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants

scientific article published on 26 November 2015

ESTs library from embryonic stages reveals tubulin and reflectin diversity in Sepia officinalis (Mollusca — Cephalopoda).

scientific article

Evolution of Hox gene clusters in gnathostomes: insights from a survey of a shark (Scyliorhinus canicula) transcriptome.

scientific article published on 8 July 2010

Evolution of axis specification mechanisms in jawed vertebrates: insights from a chondrichthyan

scientific article published on 18 April 2007

Expression sequence tag library derived from peripheral blood mononuclear cells of the chlorocebus sabaeus

scientific article

Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species

scientific article

Functional annotation of Cotesia congregata bracovirus: identification of viral genes expressed in parasitized host immune tissues

scientific article

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

scientific article

Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite

scientific article

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

scientific article

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

scientific article

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

scientific article

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

scientific article published on 16 June 2009

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.

scientific article

IMAGE: molecular integration of the analysis of the human genome and its expression

scientific article

Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells

scientific article

Identification of novel target genes for safer and more specific control of root-knot nematodes from a pan-genome mining

scientific article (publication date: October 2013)

Identification of plant-parasitism genes in nematodes in silico screening and in vivo validation in Meloidogyne incognita

scientific article published on 01 January 2011

Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak (Quercus robur L.).

scientific article published on 29 June 2016

Insights into metazoan evolution from Alvinella pompejana cDNAs

scientific article (publication date: 16 November 2010)

Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton

scientific article

Masculinization of the x chromosome in the pea aphid

scientific article

Mechanisms of endoderm formation in a cartilaginous fish reveal ancestral and homoplastic traits in jawed vertebrates

scientific article

Neurodevelopment genes in lampreys reveal trends for forebrain evolution in craniates

scientific article

Non-founder mutations in the MEFV gene establish this gene as the cause of familial Mediterranean fever (FMF) ⬇️

scientific article published on August 1, 1998

Oak genome reveals facets of long lifespan

scientific article published on 18 June 2018

Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection

scientific article published on 14 March 2014

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

scientific article published on 12 November 2018

Phylogenomics revives traditional views on deep animal relationships

scientific article (publication date: 28 April 2009)

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

scientific article published on 21 August 2014

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

scientific article (publication date: 3 December 2010)

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

scientific article

RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter

scientific article

Recurrent DNA virus domestication leading to different parasite virulence strategies.

scientific article

Reference transcriptomes and detection of duplicated copies in hexaploid and allododecaploid Spartina species (Poaceae). ⬇️

scientific article

Soil metatranscriptomics for mining eukaryotic heavy metal resistance genes

scientific article

Stage-specific gene expression during spermatogenesis in the dogfish (Scyliorhinus canicula).

scientific article

The DNA sequence and analysis of human chromosome 14

scientific article (publication date: 6 February 2003)

The Dogfish Scyliorhinus canicula: A Reference in Jawed Vertebrates

scientific article published on 01 December 2008

The Ectocarpus Genome and Brown Algal Genomics

article published in 2012

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

scientific article

The Transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent Acquisition of Some Plant Parasitism Genes by Horizontal Gene Transfer in Early-Branching Nematodes.

scientific article published on 23 October 2017

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

scientific article

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

scientific article

The genome sequence of the model ascomycete fungus Podospora anserina

scientific article

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

scientific article

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants

scientific article

Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions

scientific article

Transcriptome analyses to investigate symbiotic relationships between marine protists

scientific article

Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

scientific article (publication date: 2009)

Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae). ⬇️

scientific article

Transcriptomic response of Manduca sexta immune tissues to parasitization by the bracovirus associated wasp Cotesia congregata

scientific article published on 10 January 2015

Transcriptomics of actinorhizal symbioses reveals homologs of the whole common symbiotic signaling cascade

scientific article (publication date: June 2011)

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

scientific article

orthodenticle/otx ortholog expression in the anterior brain and eyes of Sepia officinalis (Mollusca, Cephalopoda) ⬇️

scientific article published on February 18, 2012

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