List of works - Martha Zakrzewski

Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions

scientific article

Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease

scientific article

Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing.

scientific article published on 20 December 2011

Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing

scientific article

Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions

scientific article

Correction: Bioinformatic Analysis Reveals High Diversity of Bacterial Genes for Laccase-Like Enzymes.

scientific article

EDGAR: a software framework for the comparative analysis of prokaryotic genomes

scientific article

Erratum to: Diversity of Endosymbiotic Nostoc in Gunnera magellanica from Tierra del Fuego, Chile ⬇️

scientific article published on October 1, 2013

Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects

scientific article published on 18 September 2015

Gene silencing by RNA interference in Sarcoptes scabiei: a molecular tool to identify novel therapeutic targets

scientific article

IL23R-Protective Coding Variant Promotes Beneficial Bacteria and Diversity in the Ileal Microbiome in Healthy Individuals Without Inflammatory Bowel Disease

scientific article published on 01 March 2019

Impact of experimental hookworm infection on the human gut microbiota

scientific article

Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok.

scientific article published on 16 March 2018

MetaSAMS--a novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets

scientific article published on 29 September 2012

Mining, visualizing and comparing multidimensional biomolecular data using the Genomics Data Miner (GMine) Web-Server.

scientific article

NLRP1 restricts butyrate producing commensals to exacerbate inflammatory bowel disease

scientific article published in Nature Communications

Phylogenetic relationships, stage-specific expression and localisation of a unique family of inactive cysteine proteases in Sarcoptes scabiei.

scientific article

Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing

scientific article published on 8 February 2012

Pyrosequencing reveals transient cystic fibrosis lung microbiome changes with intravenous antibiotics.

scientific article

Scabies mites alter the skin microbiome and promote growth of opportunistic pathogens in a porcine model

scientific article

Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample

scientific article published on 18 September 2014

Taxonomic Profiling and Metagenome Analysis of a Microbial Community from a Habitat Contaminated with Industrial Discharges

scientific article published on 25 June 2013

The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies

scientific article

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

scientific article published on 17 April 2015

Vitamin D and the gut microbiome: a systematic review of in vivo studies

article

Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium

scientific article published on 23 January 2019

List of works by Martha Zakrzewski

Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions

Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease

Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing.

Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing

Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions

Correction: Bioinformatic Analysis Reveals High Diversity of Bacterial Genes for Laccase-Like Enzymes.

EDGAR: a software framework for the comparative analysis of prokaryotic genomes

Erratum to: Diversity of Endosymbiotic Nostoc in Gunnera magellanica from Tierra del Fuego, Chile ⬇️

Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects

Gene silencing by RNA interference in Sarcoptes scabiei: a molecular tool to identify novel therapeutic targets

IL23R-Protective Coding Variant Promotes Beneficial Bacteria and Diversity in the Ileal Microbiome in Healthy Individuals Without Inflammatory Bowel Disease

Impact of experimental hookworm infection on the human gut microbiota

Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok.

MetaSAMS--a novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets

Mining, visualizing and comparing multidimensional biomolecular data using the Genomics Data Miner (GMine) Web-Server.

NLRP1 restricts butyrate producing commensals to exacerbate inflammatory bowel disease

Phylogenetic relationships, stage-specific expression and localisation of a unique family of inactive cysteine proteases in Sarcoptes scabiei.

Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing

Pyrosequencing reveals transient cystic fibrosis lung microbiome changes with intravenous antibiotics.

Scabies mites alter the skin microbiome and promote growth of opportunistic pathogens in a porcine model

Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample

Taxonomic Profiling and Metagenome Analysis of a Microbial Community from a Habitat Contaminated with Industrial Discharges

The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

Vitamin D and the gut microbiome: a systematic review of in vivo studies

Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium

Whole-genome sequence of the oriental lung fluke Paragonimus westermani