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List of works by Thomas Boudier

A generic classification-based method for segmentation of nuclei in 3D images of early embryos.

scientific article

A new automated 3D detection of synaptic contacts reveals the formation of cortico-striatal synapses upon cocaine treatment in vivo.

scientific article

A novel generic dictionary-based denoising method for improving noisy and densely packed nuclei segmentation in 3D time-lapse fluorescence microscopy images

scientific article published on 04 April 2019

A novel toolbox to investigate tissue spatial organization applied to the study of the islets of Langerhans.

scientific article

A public software for energy filtering transmission electron tomography (EFTET-J): application to the study of granular inclusions in bacteria from Riftia pachyptila.

scientific article published in August 2005

A-type Lamins Form Distinct Filamentous Networks with Differential Nuclear Pore Complex Associations.

scientific article

An Erg-driven transcriptional program controls B cell lymphopoiesis

scientific article published on 15 June 2020

Analysis of nuclear organization with TANGO, software for high-throughput quantitative analysis of 3D fluorescence microscopy images

scientific article

Analysis of synaptic ultrastructure without fixative using high-pressure freezing and tomography.

scientific article

Author Correction: Structural basis for delta cell paracrine regulation in pancreatic islets

scientific article published on 11 September 2019

Biomineralization Patterns of Intracellular Carbonatogenesis in Cyanobacteria: Molecular Hypotheses

DiAna, an ImageJ tool for object-based 3D co-localization and distance analysis

scientific article

Direct image-based correlative microscopy technique for coupling identification and structural investigation of bacterial symbionts associated with metazoans.

scientific article

Electron tomography of biological samples.

scientific article

From high-resolution AFM topographs to atomic models of supramolecular assemblies

scientific article published on 17 February 2007

Functional Assessment of Genetic Variants with Outcomes Adapted to Clinical Decision-Making

scientific article

High-Speed Atomic Force Microscopy: Cooperative Adhesion and Dynamic Equilibrium of Junctional Microdomain Membrane Proteins ⬇️

scientific article published on July 14, 2012

Multiple binding of repressed mRNAs by the P-body protein Rck/p54.

scientific article

Multiple-axis tomography: applications to basal bodies from Paramecium tetraurelia.

scientific article

NEMO: a tool for analyzing gene and chromosome territory distributions from 3D-FISH experiments.

scientific article

NucleiNet: A convolutional encoder-decoder network for bio-image denoising.

scientific article published in July 2017

OpenSegSPIM: a user-friendly segmentation tool for SPIM data.

scientific article

Optimal processing for gel electrophoresis images: Applying Monte Carlo Tree Search in GelApp.

scientific article published on 2 June 2016

Organising multi-dimensional biological image information: the BioImage Database.

scientific article published on January 1999

Progerin reduces LAP2α-telomere association in Hutchinson-Gilford progeria.

scientific article

Proliferation-dependent positioning of individual centromeres in the interphase nucleus of human lymphoblastoid cell lines

scientific article published on 6 May 2015

Rapid Synaptogenesis in the Nucleus Accumbens Is Induced by a Single Cocaine Administration and Stabilized by Mitogen-Activated Protein Kinase Interacting Kinase-1 Activity

scientific article published on 29 March 2017

Shifting meiotic to mitotic spindle assembly in oocytes disrupts chromosome alignment.

scientific article published on 12 January 2018

Simultaneous localization of MLL, AF4 and ENL genes in interphase nuclei by 3D-FISH: MLL translocation revisited.

scientific article published on 24 January 2006

Structural basis for delta cell paracrine regulation in pancreatic islets

scientific article published on 16 August 2019

Structural information, resolution, and noise in high-resolution atomic force microscopy topographs.

scientific article published on May 2009

TANGO: a generic tool for high-throughput 3D image analysis for studying nuclear organization

scientific article

Tangentially migrating neurons assemble a primary cilium that promotes their reorientation to the cortical plate.

scientific article

The architecture of Rhodobacter sphaeroides chromatophores

scientific article

Three-dimensional architecture of presynaptic terminal cytomatrix.

scientific article

Use of cryo‐negative staining in tomographic reconstruction of biological objects: application to T4 bacteriophage ⬇️

scientific article published on September 1, 2003

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