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List of works by Daniel A Holdbrook

A Funneled Conformational Landscape Governs Flavivirus Fusion Peptide Interaction with Lipid Membranes.

scientific article published on 6 June 2018

A Putative Role for Lipid-Protein Interactions in the Localisation of Glycosyltransferases within the Cell?

A Spring-Loaded Mechanism Governs the Clamp-like Dynamics of the Skp Chaperone

scientific article published on 10 June 2017

A Thermodynamic Funnel Drives Bacterial Lipopolysaccharide Transfer in the TLR4 Pathway

scientific article published on 17 May 2018

A polar SxxS motif drives assembly of the transmembrane domains of Toll-like receptor 4.

scientific article

Bookshelf: a simple curation system for the storage of biomolecular simulation data

scientific article (publication date: 2010)

Conformational dynamics and membrane interactions of the E. coli outer membrane protein FecA: a molecular dynamics simulation study

scientific article

Diffusion, Aggregation and Penetration: Modelling the Complex Cell Envelope of E.coli

Dynamics of Crowded Vesicles: Local and Global Responses to Membrane Composition

scientific article

Electroporation of the E. coli and S. Aureus membranes: molecular dynamics simulations of complex bacterial membranes.

scientific article

Environmental Influences on the Conformational Dynamics of Tonb-Dependent Transporters: Molecular Dynamics Simulations of Complex Membrane Models

article

Molecular basis for the maintenance of lipid asymmetry in the outer membrane ofEscherichia coli

Multiscale modeling of innate immune receptors: Endotoxin recognition and regulation by host defense peptides

scientific article published on 24 July 2019

Multiscale molecular dynamics simulation approaches to the structure and dynamics of viruses

scientific article

Partial Intrinsic Disorder Governs the Dengue Capsid Protein Conformational Ensemble

scientific article published on 05 June 2018

Pushing the Envelope: Dengue Viral Membrane Coaxed into Shape by Molecular Simulations

scientific article

Revisiting the interaction between the chaperone Skp and lipopolysaccharide

scientific article

Simulations Help Unravel Flavivirus Envelope Structure and Function

South-east Asian Zika virus strain linked to cluster of cases in Singapore, August 2016

scientific article (publication date: 22 September 2016)

Stability and membrane interactions of an autotransport protein: MD simulations of the Hia translocator domain in a complex membrane environment.

scientific article

Stability and membrane orientation of the fukutin transmembrane domain: a combined multiscale molecular dynamics and circular dichroism study

scientific article

Structural basis for endotoxin neutralization and anti-inflammatory activity of thrombin-derived C-terminal peptides

The Autotransporter β Domain: Insights into Structure and Function through Molecular Dynamics Simulations

The Complexities of the E.Coli Cell Envelope: Details Revealed by MD Simulations

The NorM MATE transporter from N. gonorrhoeae: insights into drug and ion binding from atomistic molecular dynamics simulations

scientific article published on July 2014

The Role of Instantaneous Lipid “Flows” Within the E. coli Outer Membrane

The Structural Basis for Lipid a Recognition in the CD14 Innate Immune Co-Receptor

The membranes of Gram-negative bacteria: progress in molecular modelling and simulation

scientific article published on April 2015

The simulation approach to lipid-protein interactions

scientific article published in January 2013

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