List of works by Alexander V Alekseyenko

A Link Between Plasma Microbial Translocation, Microbiome, and Autoantibody Development in First-Degree Relatives of Systemic Lupus Erythematosus Patients

scientific article published on 27 September 2019

A Simple Approximation to Bias in Gene-Environment Interaction Estimates When a Case Might Not Be the Case

scientific article published on 09 October 2019

A comprehensive evaluation of multicategory classification methods for microbiomic data

scientific article

A deep learning segmentation strategy that minimizes the amount of manually annotated images

publication published on 30 March 2021

A general framework for association analysis of microbial communities on a taxonomic tree.

scientific article

A phylogenetic approach for weighting genetic sequences

scientific article published on 28 May 2021

A simple approximation to bias in the genetic effect estimates when multiple disease states share a clinical diagnosis

scientific article published on 19 March 2019

A simple approximation to the bias of gene-environment interactions in case-control studies with silent disease

scientific article published on 08 January 2019

Accurate stochastic simulation via the step anticipation tau-leaping (SAL) algorithm

scientific article

Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

scientific article (publication date: August 2014)

Antibiotic Perturbation of Gut Microbiota Dysregulates Osteoimmune Cross Talk in Postpubertal Skeletal Development

scientific article published on 16 January 2019

Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice

scientific article published on 22 August 2016

BioSimulator.jl: Stochastic simulation in Julia

scientific article published on 10 October 2018

Case-control studies of gene-environment interactions. When a case might not be the case

scientific article published in PLoS ONE

Cigarette smoking and the oral microbiome in a large study of American adults

scientific article

Community differentiation of the cutaneous microbiota in psoriasis

scientific article

Comparative genomics of oral isolates of Streptococcus mutans by in silico genome subtraction does not reveal accessory DNA associated with severe early childhood caries.

scientific article

Cutaneous microbiome effects of fluticasone propionate cream and adjunctive bleach baths in childhood atopic dermatitis.

scientific article

Distinct systemic microbiome and microbial translocation are associated with plasma level of anti-CD4 autoantibody in HIV infection

scientific article published in Scientific Reports

Drinking alcohol is associated with variation in the human oral microbiome in a large study of American adults.

scientific article published on 24 April 2018

Effect of antibiotic pre-treatment and pathogen challenge on the intestinal microbiota in mice

scientific article

Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation

scientific article published on July 2013

Evidence for Differentiation of Colon Tissue Microbiota in Patients with and without Postoperative Hirschsprung's Associated Enterocolitis: A Pilot Study

scientific article published on 08 January 2021

Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation

scientific article

Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes

scientific article published on 16 March 2007

Immune Responses Vary in Preinvasive Colorectal Lesions by Tumor Location and Histology

scientific article published on 02 August 2021

Longitudinal changes during pregnancy in gut microbiota and methylmercury biomarkers, and reversal of microbe-exposure correlations

scientific article published on 11 January 2019

Lupus nephritis is linked to disease-activity associated expansions and immunity to a gut commensal

scientific article published on 19 February 2019

MODIMA, a Method for Multivariate Omnibus Distance Mediation Analysis, Allows for Integration of Multivariate Exposure-Mediator-Response Relationships

scientific article published on 11 July 2019

Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment

scientific article published on 30 June 2015

Microbiomic signatures of psoriasis: feasibility and methodology comparison.

scientific article

Multivariate Welch t-test on distances.

scientific article

Not all phenotypes are created equal: covariates of success in e-phenotype specification

scientific article published in 2022

OHMI: the ontology of host-microbiome interactions

scientific article published on 30 December 2019

Online algorithm for assignment of specimens to pooled or individual testing using risk models provides a practical way to increase testing capacity

scientific article published in 2023

PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances

scientific article published on 19 May 2016

Phylogenetic analysis of glucosyltransferases and implications for the coevolution of mutans streptococci with their mammalian hosts

scientific article

Phylogenic inference using alignment-free methods for applications in microbial community surveys using 16s rRNA gene.

scientific article

Plasma levels of interleukin-1 receptor antagonist (IL1Ra) predict radiographic progression of symptomatic knee osteoarthritis

scientific article

Preinvasive Colorectal Lesions of African Americans Display an Immunosuppressive Signature Compared to Caucasian Americans

scientific article published on 27 April 2021

Rigorous Plasma Microbiome Analysis Method Enables Disease Association Discovery in Clinic

scientific article published on 01 January 2020

Serum Proteins Associated with Emphysema Progression in Severe Alpha-1 Antitrypsin Deficiency

scientific article published on 15 July 2017

Simrank: Rapid and sensitive general-purpose k-mer search tool

scientific article

Strategic applications of gene expression: from drug discovery/development to bedside

scientific article

Systemic Lupus Erythematosus and dysbiosis in the microbiome: cause or effect or both?

scientific article published on 04 October 2019

Systemic translocation of Staphylococcus drives autoantibody production in HIV disease

article

Task Force on Design and Analysis in Oral Health Research: Host-Microbiome Interactions in Dysbiosis.

scientific article published on 17 August 2017

Trends and developments in bioinformatics in 2010: prospects and perspectives.

scientific article published on January 2011

Tristetraprolin Is Required for Alveolar Bone Homeostasis.

scientific article published in March 2018

Tumor-Infiltrating Lymphocytes and Colorectal Cancer Survival in African American and Caucasian Patients.

scientific article published on 16 May 2018

Wagner and Dollo: a stochastic duet by composing two parsimonious solos.

scientific article

[Formula: see text]-test: robust distance-based multivariate analysis of variance

article

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