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List of works by Michael E Wall

Activation of the Escherichia coli marA/soxS/rob regulon in response to transcriptional activator concentration.

scientific article published on 13 May 2008

Allostery in a coarse-grained model of protein dynamics

scientific article published on 02 November 2005

Biomolecular Solvation Structure Revealed by Molecular Dynamics Simulations

scientific article published on 11 March 2019

Bringing Diffuse X-ray Scattering Into Focus

Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering

scientific article

Consistency of gene starts among Burkholderia genomes ⬇️

scientific article published on February 22, 2011

Determinants of bistability in induction of the Escherichia coli lac operon.

scientific article

Diffuse X-ray scattering to model protein motions

scientific article

Domain motions of Argonaute, the catalytic engine of RNA interference

scientific article

Dynamical Model of Drug Accumulation in Bacteria: Sensitivity Analysis and Experimentally Testable Predictions

scientific article

Editorial: Selected papers from the Third q-bio Conference on Cellular Information Processing

scientific article published on 01 November 2010

Efficient parallel linear scaling construction of the density matrix for Born-Oppenheimer molecular dynamics

scientific article published on 29 September 2015

Enhancing Sampling of Water Rehydration on Ligand Binding: A Comparison of Techniques

scientific article published on 11 February 2022

Fast dynamics perturbation analysis for prediction of protein functional sites

scientific article

Genome majority vote improves gene predictions

scientific article

Graph-based linear scaling electronic structure theory. ⬇️

scientific article published in June 2016

Hidden structure in protein energy landscapes.

scientific article

High-resolution macromolecular structure determination using CCD detectors and synchrotron radiation.

scientific article published in August 1995

Interactions in native binding sites cause a large change in protein dynamics

scientific article published on 14 February 2006

Internal protein motions in molecular-dynamics simulations of Bragg and diffuse X-ray scattering.

scientific article published on 25 January 2018

Interpreting macromolecular diffraction through simulation

scientific article published in 2023

Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein

scientific article published on 01 November 2019

Literature mining of protein-residue associations with graph rules learned through distant supervision

scientific article

Measuring and modeling diffuse scattering in protein X-ray crystallography.

scientific article

Mechanisms associated with cGMP binding and activation of cGMP-dependent protein kinase

scholarly article

Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis

scientific article published on 04 December 2019

Model of Transcriptional Activation By MarA in Escherichia Coli

scientific article published in 2010

Model of transcriptional activation by MarA in Escherichia coli

scientific article

Motions of calmodulin characterized using both Bragg and diffuse X-ray scattering

scientific article

Multiple functions of a feed-forward-loop gene circuit.

scientific article published on 26 April 2005

Predicting Binding Sites by Analyzing Allosteric Effects ⬇️

scientific article published on January 1, 2012

Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles

scientific article

Q-bio 2007: a watershed moment in modern biology

scientific article published on 4 December 2007

Quantifying allosteric effects in proteins.

scientific article

Quantum crystallographic charge density of urea.

scientific article published on 08 June 2016

Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism

scientific article

Recursive Factorization of the Inverse Overlap Matrix in Linear-Scaling Quantum Molecular Dynamics Simulations

scientific article

SVDMAN--singular value decomposition analysis of microarray data.

scientific article published in June 2001

Selected papers from the First q-bio Conference on Cellular Information Processing

scientific article published on 01 September 2008

Selected papers from the Fourth Annual q-bio Conference on Cellular Information Processing

scientific article published on 10 August 2011

Structure–function relations are subtle in genetic regulatory networks ⬇️

scientific article published on February 15, 2011

Text mining improves prediction of protein functional sites

scientific article

The Seventh q-bio Conference: meeting report and preface

scientific article published on 30 July 2014

The eighth q-bio conference: meeting report and special issue preface

scientific article published on 30 December 2015

Three-dimensional diffuse x-ray scattering from crystals of Staphylococcal nuclease

scientific article

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