List of works by Keitaro Yamashita

An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography

scientific article published on 11 September 2015

An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser

scientific article published on 17 October 2019

An unprecedented dioxygen species revealed by serial femtosecond rotation crystallography in copper nitrite reductase.

scientific article published in January 2018

An unprecedented insight into the catalytic mechanism of copper nitrite reductase from atomic-resolution and damage-free structures

Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus.

scientific article published on 2 August 2017

B/N-Doped p-Arylenevinylene Chromophores: Synthesis, Properties, and Microcrystal Electron Crystallographic Study

scientific article published on 22 October 2020

Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.

scientific article published on 17 November 2017

Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography

scientific article published on 23 June 2019

Cryo-EM structures capture the transport cycle of the P4-ATPase flippase

scientific article published on 15 August 2019

Cryo-EM structures of calcium homeostasis modulator channels in diverse oligomeric assemblies

scientific article published on 17 July 2020

Crystal Engineering of Self-Assembled Porous Protein Materials in Living Cells

scientific article published on 17 January 2017

Crystal Structures of Human Orexin 2 Receptor Bound to the Subtype-Selective Antagonist EMPA.

scientific article published on 27 November 2017

Crystal structure of Drosophila Piwi

scientific article published on 12 February 2020

Crystal structure of heliorhodopsin

scientific article published on 25 September 2019

Crystal structure of plant vacuolar iron transporter VIT1

scientific article published on 11 February 2019

Crystal structure of the Agrobacterium tumefaciens type VI effector-immunity complex

scientific article published on 30 November 2018

Crystal structure of the endogenous agonist-bound prostanoid receptor EP3

scientific article published on 03 December 2018

Crystal structure of the natural anion-conducting channelrhodopsin GtACR1

scientific article published in Nature

Crystal structure of the octameric pore of staphylococcal γ-hemolysin reveals the β-barrel pore formation mechanism by two components

scientific article

Crystal structure of the red light-activated channelrhodopsin Chrimson

scientific article published in Nature Communications

Crystal structures of human ET receptor provide mechanistic insight into receptor activation and partial activation

scientific article published in Nature Communications

Crystal structures of the TRIC trimeric intracellular cation channel orthologues

scientific article published on December 2016

Crystallization and preliminary X-ray crystallographic analysis of a bacterial Asn-transamidosome

scientific article published on 24 May 2014

Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography

scientific article

EMDA: A Python package for Electron Microscopy Data Analysis

scientific article published on 13 December 2021

Efficient synthesis of α-galactosyl oligosaccharides using a mutant Bacteroides thetaiotaomicron retaining α-galactosidase (BtGH97b).

scientific article

Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.

scientific article published on 8 August 2017

KAMO: towards automated data processing for microcrystals.

scientific article

Ligand binding to human prostaglandin E receptor EP4 at the lipid-bilayer interface

scientific article published on 03 December 2018

Molecular Basis for the Recognition of Long-chain Substrates by Plant  -Glucosidases

scientific article

Na+-mimicking ligands stabilize the inactive state of leukotriene B4 receptor BLT1.

scientific article published on 8 January 2018

Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses

scientific article

New model-fitting and model-completion programs for automated iterative nucleic acid refinement

scientific article

Protein microcrystallography using synchrotron radiation

scientific article

Recent developments in CrystFEL

scientific article

Remote access and automation of SPring-8 MX beamlines

article

Short-lived intermediate in NO generation by P450 NO reductase captured by time-resolved IR spectroscopy and XFEL crystallography

Structural advantage of sugar beet α-glucosidase to stabilize the Michaelis complex with long-chain substrate

scientific article published on December 2014

Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump

scientific article

Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg2+ channel MgtE.

scientific article published on 4 November 2014

Structural basis for ligand capture and release by the endocytic receptor ApoER2.

scientific article published on 26 April 2017

Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate

scientific article published on 17 August 2018

Structural basis for the facilitative diffusion mechanism by SemiSWEET transporter

scientific article published on 19 January 2015

Structural basis for xenobiotic extrusion by eukaryotic MATE transporter

scientific article published on 21 November 2017

Structural basis of reverse nucleotide polymerization

scientific article

Structural insights into ligand recognition by the lysophosphatidic acid receptor LPA6.

scientific article published on 9 August 2017

Structural insights into the mechanism of rhodopsin phosphodiesterase

scientific article published on 05 November 2020

Structural insights into the subtype-selective antagonist binding to the M2 muscarinic receptor

scientific article published on 12 November 2018

Structural mechanisms of selectivity and gating in anion channelrhodopsins

scientific article published in Nature

Structure of in cell protein crystals containing organometallic complexes

scientific article published on 15 November 2017

Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity.

scientific article

Supramolecular protein cages constructed from a crystalline protein matrix.

scientific article

The <i>CCP</i>4 suite: integrative software for macromolecular crystallography

scientific article published in 2023

The loop structure of Actinomycete glycoside hydrolase family 5 mannanases governs substrate recognition

scientific article

X-ray Crystallographic Structure of Thermophilic Rhodopsin: IMPLICATIONS FOR HIGH THERMAL STABILITY AND OPTOGENETIC FUNCTION

scientific article

X-ray structures of endothelin ETB receptor bound to clinical antagonist bosentan and its analog

scientific article published on 14 August 2017

ZOO: an automatic data-collection system for high-throughput structure analysis in protein microcrystallography

scientific article published on 28 January 2019

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