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List of works by Richard J. Edwards

Absolute Net Charge and the Biological Activity of Oligopeptides

scientific article published on 01 September 2006

BADASP: predicting functional specificity in protein families using ancestral sequences.

scientific article published on 13 September 2005

Chromosome-level de novo genome assembly of Telopea speciosissima (New South Wales waratah) using long-reads, linked-reads and Hi-C

scientific article published on 2 June 2021

CompariMotif: quick and easy comparisons of sequence motifs

scientific article

Computational identification and analysis of protein short linear motifs.

scientific article published on June 2010

Computational prediction of short linear motifs from protein sequences.

scientific article published on January 2015

Contrasting Patterns of Single Nucleotide Polymorphisms and Structural Variation Across Multiple Invasions

scientific article published in 2023

Correction: SLiMEnrich: computational assessment of protein-protein interaction data as a source of domain-motif interactions

scientific article published on 21 November 2018

Correlation of probiotic Lactobacillus salivarius growth phase with its cell wall-associated proteome

scientific article

Draft genome assembly of the invasive cane toad, Rhinella marina ⬇️

scientific article published on 01 September 2018

ELM--the database of eukaryotic linear motifs

scientific article

Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins

scientific article

Evaluation of Whether Accelerated Protein Evolution in Chordates Has Occurred before, after, or Simultaneously with Gene Duplication

article

Fluorescent protein-mediated colour polymorphism in reef corals: multicopy genes extend the adaptation/acclimatization potential to variable light environments

scientific article

GASP: Gapped Ancestral Sequence Prediction for proteins

scientific article

HSP-4 endoplasmic reticulum (ER) stress pathway is not activated in a C. elegans model of ethanol intoxication and withdrawal

article

High risk human papilloma viruses (HPVs) are present in benign prostate tissues before development of HPV associated prostate cancer.

scientific article

Interactome-wide prediction of short, disordered protein interaction motifs in humans

scientific article published on 30 August 2011

Intergenerational effects of manipulating DNA methylation in the early life of an iconic invader

Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery

scientific article published on 9 January 2009

Metabotropic Glutamate Receptors: MODULATORS OF CONTEXT-DEPENDENT FEEDING BEHAVIOUR IN C. ELEGANS

scientific article published on 13 April 2015

Monitoring modulators of platelet aggregation in a microtiter plate assay

scientific article (publication date: October 2006)

Parallel Evolution in Streptococcus pneumoniae Biofilms.

scientific article published on 09 May 2016

Plant adaptation or acclimation to rising CO2 ? Insight from first multigenerational RNA-Seq transcriptome

scientific article published on 19 August 2016

Protein interactions with the platelet integrin alpha(IIb) regulatory motif

scientific article published in August 2010

QSLiMFinder: improved short linear motif prediction using specific query protein data.

scientific article

Quantitative Proteomics of the Infectious and Replicative Forms of Chlamydia trachomatis

scientific article published on 12 February 2016

Responses of the Emiliania huxleyi proteome to ocean acidification

scientific article

SLiM-Enrich: computational assessment of protein-protein interaction data as a source of domain-motif interactions

scientific article published on 31 October 2018

SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent

scientific article published on 19 July 2006

SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins.

scientific article

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs

scientific article

SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions

scientific article

SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks.

scientific article published on 05 August 2015

SLiMSearch 2.0: biological context for short linear motifs in proteins

scientific article

Selective toxicity of the anthelmintic emodepside revealed by heterologous expression of human KCNMA1 in Caenorhabditis elegans

scientific article

Shotgun proteomic analysis of Emiliania huxleyi, a marine phytoplankton species of major biogeochemical importance

article

The Australian dingo is an early offshoot of modern breed dogs

scientific article published on 22 April 2022

The SLiMDisc server: short, linear motif discovery in proteins

scientific article published on 18 June 2007

Transcriptome analysis of human brain tissue identifies reduced expression of complement complex C1Q Genes in Rett syndrome.

scientific article

Transcript‐ and annotation‐guided genome assembly of the European starling

scientific article published in 2022

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