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List of works by Matteo Fumagalli

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Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

scientific article
Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution

scientific article
Greenlandic Inuit show genetic signatures of diet and climate adaptation

scientific article
A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes

scientific article
Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears

scientific article
Parasites represent a major selective force for interleukin genes and shape the genetic predisposition to autoimmune conditions

scientific article
Prehistoric genomes reveal the genetic foundation and cost of horse domestication

scientific article
Evolutionary genetic dissection of human interferons

scientific article published on 12 December 2011
Quantifying population genetic differentiation from next-generation sequencing data

scientific article
ngsTools: methods for population genetics analyses from next-generation sequencing data

scientific article
Widespread balancing selection and pathogen-driven selection at blood group antigen genes

scientific article
Speciation with gene flow in equids despite extensive chromosomal plasticity

scientific article
Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse

scientific article published on 22 September 2015
Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

scientific article
The origin and evolution of maize in the Southwestern United States

scientific article
Recent Asian origin of chytrid fungi causing global amphibian declines.

scientific article
Assessing the effect of sequencing depth and sample size in population genetics inferences

scientific article
Genetic diversity at endoplasmic reticulum aminopeptidases is maintained by balancing selection and is associated with natural resistance to HIV-1 infection

article
The signature of long-standing balancing selection at the human defensin beta-1 promoter.

scientific article published on 25 September 2008
Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation

scientific article
Uncovering the genetic history of the present-day Greenlandic population.

scientific article
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments

scientific article
Genome-Wide Identification of Susceptibility Alleles for Viral Infections through a Population Genetics Approach

scientific article (publication date: 19 February 2010)
Population genetics of IFIH1: ancient population structure, local selection, and implications for susceptibility to type 1 diabetes

scientific article published on 10 June 2010
Both selective and neutral processes drive GC content evolution in the human genome

scientific article
Human genome variability, natural selection and infectious diseases

scientific article published on 29 May 2014
Long-term balancing selection maintains trans-specific polymorphisms in the human TRIM5 gene

scientific article published on 2 September 2010
The landscape of human genes involved in the immune response to parasitic worms

scientific article published on August 31, 2010
Archaic Adaptive Introgression in TBX15/WARS2.

scientific article
The role of protozoa-driven selection in shaping human genetic variability

scientific article published on 25 January 2010
Fine mapping of AHI1 as a schizophrenia susceptibility gene: from association to evolutionary evidence

scientific article published on 6 April 2010
Diverse evolutionary histories for beta-adrenoreceptor genes in humans

scientific article published on 02 July 2009
Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers

scientific article published on 24 October 2017
Balancing selection is common in the extended MHC region but most alleles with opposite risk profile for autoimmune diseases are neutrally evolving

scientific article
A trans-specific polymorphism in ZC3HAV1 is maintained by long-standing balancing selection and may confer susceptibility to multiple sclerosis.

scientific article published on 6 January 2012
Identification of a new susceptibility variant for multiple sclerosis in OAS1 by population genetics analysis.

scientific article
A positively selected APOBEC3H haplotype is associated with natural resistance to HIV-1 infection

scientific article
Crohn's disease loci are common targets of protozoa-driven selection

scientific article published on 6 February 2013
A population genetics study of the familial Mediterranean fever gene: evidence of balancing selection under an overdominance regime

scientific article published on 13 August 2009
Improving the estimation of genetic distances from Next-Generation Sequencing data

article by Filipe G. Vieira et al published 30 March 2015 in Biological Journal of the Linnean Society
An evolutionary analysis of RAC2 identifies haplotypes associated with human autoimmune diseases.

scientific article published on 16 June 2011
Variants in SNAP25 are targets of natural selection and influence verbal performances in women

scientific article
A scan for human-specific relaxation of negative selection reveals unexpected polymorphism in proteasome genes

scientific article published on 22 May 2013
Polymorphisms in the CPB2 Gene Are Maintained by Balancing Selection and Result in Haplotype-Preferential Splicing of Exon 7

article
A complex selection signature at the human AVPR1B gene

scientific article
Genetic variability in the ACE gene region surrounding the Alu I/D polymorphism is maintained by balancing selection in human populations

scientific article
Long-standing balancing selection in the THBS4 gene: influence on sex-specific brain expression and gray matter volumes in Alzheimer disease.

scientific article
An evolutionary history of the selectin gene cluster in humans.

scientific article
ImaGene: a convolutional neural network to quantify natural selection from genomic data

scientific article published on 22 November 2019
Deep Learning in Population Genetics

scientific article published in 2023

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