List of works - Wen-Chi Chang

A comprehensive resource for integrating and displaying protein post-translational modifications

scientific article published on 23 June 2009

AlgaePath: comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae.

scientific article

AtPAN: an integrated system for reconstructing transcriptional regulatory networks in Arabidopsis thaliana ⬇️

scientific article published on March 8, 2012

AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs.

scientific article published on 13 May 2015

Characterization of DNA end-binding activities in higher plants.

scientific article

Common Stress Transcriptome Analysis Reveals Functional and Genomic Architecture Differences Between Early and Delayed Response Genes

scientific article published on 22 January 2017

Delineation of condition specific Cis- and Trans-acting elements in plant promoters under various Endo- and exogenous stimuli.

scientific article

Differential regulation of Ku gene expression in etiolated mung bean hypocotyls by auxins

scientific article published on 10 April 2007

EXPath tool-a system for comprehensively analyzing regulatory pathways and coexpression networks from high-throughput transcriptome data

scientific article

EXPath: a database of comparative expression analysis inferring metabolic pathways for plants

scientific article

Elements Involved in the Rsv3-Mediated Extreme Resistance against an Avirulent Strain of Soybean Mosaic Virus

article

Functional roles of arginine residues in mung bean vacuolar H+-pyrophosphatase

scientific article published on 03 May 2007

GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group ⬇️

scientific article published on January 17, 2012

Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data

scientific article

Incorporating support vector machine for identifying protein tyrosine sulfation sites.

scientific article

Large-scale investigation of human TF-miRNA relations based on coexpression profiles

scientific article

N-Ace: using solvent accessibility and physicochemical properties to identify protein N-acetylation sites.

scientific article published on November 2010

Novel bioinformatics approaches for analysis of high-throughput biological data.

scientific article

Ovate family protein 1 as a plant Ku70 interacting protein involving in DNA double-strand break repair ⬇️

scientific article published on September 16, 2010

Paddy-upland rotation for sustainable agriculture with regards to diverse soil microbial community.

scientific article

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants

scientific article published on 17 October 2015

PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants

article

PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups

scientific article

RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans

scientific article

The gene structure and hypervariability of the complete Penaeus monodon Dscam gene

scientific article published on 12 November 2019

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

scientific article published on 01 May 2019

dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications ⬇️

scientific article published on November 27, 2012

dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications

scientific article published on 01 January 2019

miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression

scientific article

microRPM: A microRNA Prediction Model based only on plant small RNA sequencing data.

scientific article published on 9 November 2017

List of works by Wen-Chi Chang

A comprehensive resource for integrating and displaying protein post-translational modifications

AlgaePath: comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae.

AtPAN: an integrated system for reconstructing transcriptional regulatory networks in Arabidopsis thaliana ⬇️

AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs.

Characterization of DNA end-binding activities in higher plants.

Common Stress Transcriptome Analysis Reveals Functional and Genomic Architecture Differences Between Early and Delayed Response Genes

Delineation of condition specific Cis- and Trans-acting elements in plant promoters under various Endo- and exogenous stimuli.

Differential regulation of Ku gene expression in etiolated mung bean hypocotyls by auxins

EXPath tool-a system for comprehensively analyzing regulatory pathways and coexpression networks from high-throughput transcriptome data

EXPath: a database of comparative expression analysis inferring metabolic pathways for plants

Elements Involved in the Rsv3-Mediated Extreme Resistance against an Avirulent Strain of Soybean Mosaic Virus

Functional roles of arginine residues in mung bean vacuolar H+-pyrophosphatase

GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group ⬇️

Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data

Incorporating support vector machine for identifying protein tyrosine sulfation sites.

Large-scale investigation of human TF-miRNA relations based on coexpression profiles

N-Ace: using solvent accessibility and physicochemical properties to identify protein N-acetylation sites.

Novel bioinformatics approaches for analysis of high-throughput biological data.

Ovate family protein 1 as a plant Ku70 interacting protein involving in DNA double-strand break repair ⬇️

Paddy-upland rotation for sustainable agriculture with regards to diverse soil microbial community.

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants

PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants

PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups

RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans

The gene structure and hypervariability of the complete Penaeus monodon Dscam gene

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications ⬇️

dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications

miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression

microRPM: A microRNA Prediction Model based only on plant small RNA sequencing data.