List of works - Evelien M. Bunnik

Activity of broadly neutralizing antibodies, including PG9, PG16, and VRC01, against recently transmitted subtype B HIV-1 variants from early and late in the epidemic

scientific article

Adaptation of HIV-1 envelope gp120 to humoral immunity at a population level

article

Analysis of nucleosome positioning landscapes enables gene discovery in the human malaria parasite Plasmodium falciparum

scientific article published on 25 November 2015

B Cell Receptor Repertoire Analysis in Malaria-Naive and Malaria-Experienced Individuals Reveals Unique Characteristics of Atypical Memory B Cells

scientific article published on 15 September 2021

Changing sensitivity to broadly neutralizing antibodies b12, 2G12, 2F5, and 4E10 of primary subtype B human immunodeficiency virus type 1 variants in the natural course of infection

scientific article published on 17 June 2009

Characterization of cereal toxicity for celiac disease patients based on protein homology in grains

scientific article

Cross‐Reactive Neutralizing Humoral Immunity Does Not Protect from HIV Type 1 Disease Progression

article

DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum

scientific article

Development of a replication-deficient adenoviral vector-based vaccine candidate for the interception of HPV16- and HPV18-induced infections and disease

scientific article published on 6 March 2017

Dynamic and Combinatorial Landscape of Histone Modifications during the Intraerythrocytic Developmental Cycle of the Malaria Parasite.

scientific article published on 12 June 2016

Emergence of monoclonal antibody b12-resistant human immunodeficiency virus type 1 variants during natural infection in the absence of humoral or cellular immune pressure

scientific article

Escape from autologous humoral immunity of HIV-1 is not associated with a decrease in replicative capacity.

scientific article published on 27 November 2009

Escape of human immunodeficiency virus type 1 from broadly neutralizing antibodies is not associated with a reduction of viral replicative capacity in vitro.

scientific article published on 13 March 2007

Genome-wide mapping of DNA methylation in the human malaria parasite Plasmodium falciparum

scientific article (publication date: 11 December 2013)

Immunization with recombinant HLA classes I and II, HIV-1 gp140, and SIV p27 elicits protection against heterologous SHIV infection in rhesus macaques.

scientific article

Immunization with recombinant macaque major histocompatibility complex class I and II and human immunodeficiency virus gp140 inhibits simian-human immunodeficiency virus infection in macaques.

scientific article published on 4 April 2012

Increased neutralization sensitivity of recently emerged CXCR4-using human immunodeficiency virus type 1 strains compared to coexisting CCR5-using variants from the same patient.

scientific article published on November 2006

Longer V1V2 region with increased number of potential N-linked glycosylation sites in the HIV-1 envelope glycoprotein protects against HIV-specific neutralizing antibodies

scientific article

Longitudinal analysis of FcRL5 expression and clonal relationships among classical and atypical memory B cells following malaria

scientific article published on 10 November 2021

Lysine supplementation is not effective for the prevention or treatment of feline herpesvirus 1 infection in cats: a systematic review

scientific article

Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum

scientific article

Nascent RNA sequencing reveals mechanisms of gene regulation in the human malaria parasite Plasmodium falciparum.

scientific article

P04-49 LB. Adaptation of HIV-1 envelope glycoprotein to humoral immunity at a population level.

scientific article published on 22 October 2009

P09-14. Emergence of b12 resistant rapidly replication HIV-1 variants during natural infection in the absence of humoral or cellular immune pressure.

scientific article published on 22 October 2009

P19-08. Immunisation with recombinant HLA class I and II, HIV-1gp140 and SIVp27 antigens elicits protection against SHIV-SF162P4 infection in rhesus macaques.

scientific article published on 22 October 2009

P19-20. Allogeneic stimulation of the anti-viral APOBEC3G in human CD4+ T cells and prevention of SHIV infectivity in macaques immunized with HLA antigens.

scientific article published on 22 October 2009

PfAlba1: master regulator of translation in the malaria parasite

scientific article

Polymorphism in HIV-1 dependency factor PDE8A affects mRNA level and HIV-1 replication in primary macrophages.

scientific article

Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum

scientific article

PuFFIN--a parameter-free method to build nucleosome maps from paired-end reads.

scientific article

Rapid escape from preserved cross-reactive neutralizing humoral immunity without loss of viral fitness in HIV-1-infected progressors and long-term nonprogressors

scientific article

Responsiveness of cats (Felidae) to silver vine (Actinidia polygama), Tatarian honeysuckle (Lonicera tatarica), valerian (Valeriana officinalis) and catnip (Nepeta cataria).

scientific article

Single nucleotide polymorphism in gene encoding transcription factor Prep1 is associated with HIV-1-associated dementia

scientific article

The Role of Chromatin Structure in Gene Regulation of the Human Malaria Parasite

scientific article published on 5 January 2017

The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum

scientific article (publication date: 5 July 2016)

The multifunctional autophagy pathway in the human malaria parasite, Plasmodium falciparum

scientific article

The role of innate APOBEC3G and adaptive AID immune responses in HLA-HIV/SIV immunized SHIV infected macaques

scientific article (publication date: 2012)

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

scientific article

List of works by Evelien M. Bunnik

Activity of broadly neutralizing antibodies, including PG9, PG16, and VRC01, against recently transmitted subtype B HIV-1 variants from early and late in the epidemic

Adaptation of HIV-1 envelope gp120 to humoral immunity at a population level

Analysis of nucleosome positioning landscapes enables gene discovery in the human malaria parasite Plasmodium falciparum

B Cell Receptor Repertoire Analysis in Malaria-Naive and Malaria-Experienced Individuals Reveals Unique Characteristics of Atypical Memory B Cells

Changing sensitivity to broadly neutralizing antibodies b12, 2G12, 2F5, and 4E10 of primary subtype B human immunodeficiency virus type 1 variants in the natural course of infection

Characterization of cereal toxicity for celiac disease patients based on protein homology in grains

Cross‐Reactive Neutralizing Humoral Immunity Does Not Protect from HIV Type 1 Disease Progression

DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum

Development of a replication-deficient adenoviral vector-based vaccine candidate for the interception of HPV16- and HPV18-induced infections and disease

Dynamic and Combinatorial Landscape of Histone Modifications during the Intraerythrocytic Developmental Cycle of the Malaria Parasite.

Emergence of monoclonal antibody b12-resistant human immunodeficiency virus type 1 variants during natural infection in the absence of humoral or cellular immune pressure

Escape from autologous humoral immunity of HIV-1 is not associated with a decrease in replicative capacity.

Escape of human immunodeficiency virus type 1 from broadly neutralizing antibodies is not associated with a reduction of viral replicative capacity in vitro.

Genome-wide mapping of DNA methylation in the human malaria parasite Plasmodium falciparum

Immunization with recombinant HLA classes I and II, HIV-1 gp140, and SIV p27 elicits protection against heterologous SHIV infection in rhesus macaques.

Immunization with recombinant macaque major histocompatibility complex class I and II and human immunodeficiency virus gp140 inhibits simian-human immunodeficiency virus infection in macaques.

Increased neutralization sensitivity of recently emerged CXCR4-using human immunodeficiency virus type 1 strains compared to coexisting CCR5-using variants from the same patient.

Longer V1V2 region with increased number of potential N-linked glycosylation sites in the HIV-1 envelope glycoprotein protects against HIV-specific neutralizing antibodies

Longitudinal analysis of FcRL5 expression and clonal relationships among classical and atypical memory B cells following malaria

Lysine supplementation is not effective for the prevention or treatment of feline herpesvirus 1 infection in cats: a systematic review

Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum

Nascent RNA sequencing reveals mechanisms of gene regulation in the human malaria parasite Plasmodium falciparum.

P04-49 LB. Adaptation of HIV-1 envelope glycoprotein to humoral immunity at a population level.

P09-14. Emergence of b12 resistant rapidly replication HIV-1 variants during natural infection in the absence of humoral or cellular immune pressure.

P19-08. Immunisation with recombinant HLA class I and II, HIV-1gp140 and SIVp27 antigens elicits protection against SHIV-SF162P4 infection in rhesus macaques.

P19-20. Allogeneic stimulation of the anti-viral APOBEC3G in human CD4+ T cells and prevention of SHIV infectivity in macaques immunized with HLA antigens.

PfAlba1: master regulator of translation in the malaria parasite

Polymorphism in HIV-1 dependency factor PDE8A affects mRNA level and HIV-1 replication in primary macrophages.

Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum

PuFFIN--a parameter-free method to build nucleosome maps from paired-end reads.

Rapid escape from preserved cross-reactive neutralizing humoral immunity without loss of viral fitness in HIV-1-infected progressors and long-term nonprogressors

Responsiveness of cats (Felidae) to silver vine (Actinidia polygama), Tatarian honeysuckle (Lonicera tatarica), valerian (Valeriana officinalis) and catnip (Nepeta cataria).

Single nucleotide polymorphism in gene encoding transcription factor Prep1 is associated with HIV-1-associated dementia

The Role of Chromatin Structure in Gene Regulation of the Human Malaria Parasite

The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum

The multifunctional autophagy pathway in the human malaria parasite, Plasmodium falciparum

The role of innate APOBEC3G and adaptive AID immune responses in HLA-HIV/SIV immunized SHIV infected macaques

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression